View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_49 (Length: 232)
Name: NF11813_high_49
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 20630595 - 20630371
Alignment:
| Q |
8 |
atgaaccacctgtcctcaactaaccaatgacccacatatataaccactcataatttcattccttttacatttcttataaaactttattatgtacaaacat |
107 |
Q |
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| T |
20630595 |
atgaaccacgtgtcctcaactaaccaatgacccacatatataaccactcataatttcattccttttacatttcttataaaactttattatgtacaaacat |
20630496 |
T |
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| Q |
108 |
tgtgattttacaaacacaacaacatcatatatagttaatcacttatagaaatcttgaaggtgacaccaacatccaaagaatcataactatattgatcaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20630495 |
tgtgattttacaaacacaacaacatcatatatagttaatcacttatagaaatcttgaaggtgacaccaacatccaaagaatcataactatattgatcaag |
20630396 |
T |
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| Q |
208 |
ctaagagccaaaaatctttatgacg |
232 |
Q |
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||||||||||||||||||||||||| |
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| T |
20630395 |
ctaagagccaaaaatctttatgacg |
20630371 |
T |
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