View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_52 (Length: 228)
Name: NF11813_high_52
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 24407280 - 24407119
Alignment:
| Q |
6 |
acaaaactaacttagatttcaatcagagagaagata-ggaagctaataat---taaggaacaaaactgaacagaacaaaacacacctagcagcagcgaga |
101 |
Q |
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| T |
24407280 |
acaaaaataacttagatttcaatcagagagaaaataaggaagctaataataattaaggaacaaaactgaacagaagaaaacacacctagcagcagcaaga |
24407181 |
T |
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| Q |
102 |
tgtgaagagacaacattgtgataattagtagcattgtgaaaagagtttactacaatgacaat |
163 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24407180 |
tgtgaagagacaacatcgtgataattagtagcattgtgaaaagagtttactacaatgacaat |
24407119 |
T |
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