View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11813_high_54 (Length: 216)
Name: NF11813_high_54
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 40746069 - 40745893
Alignment:
| Q |
23 |
aaagaaaatactgtaatgaaggcgggcagtcaatcaggcctagaacacgagatattcagtgtatatcctttctcattgagagctcgtcatcttgttgtaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40746069 |
aaagaaaatactgtaatgaaggcgggcagtcaatcaggcctagaacacgagatattcagtgtatatcctttctcattgagagctcgtcatcttgttgtaa |
40745970 |
T |
|
| Q |
123 |
atcaatcaaatctagttagtttgattgtctctctaagagtgataactatggttgatatttgatttgtattgttatat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40745969 |
atcaatcaaatctagttagtttgattgtctctctaagagtgataactatggttgatatttgatttgtattgttatat |
40745893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University