View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_high_55 (Length: 206)

Name: NF11813_high_55
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_high_55
NF11813_high_55
[»] chr5 (4 HSPs)
chr5 (1-162)||(29949956-29950117)
chr5 (1-162)||(29951594-29951755)
chr5 (1-151)||(244603-244753)
chr5 (54-150)||(27401975-27402071)
[»] chr4 (12 HSPs)
chr4 (1-165)||(9167025-9167188)
chr4 (1-151)||(15017805-15017955)
chr4 (1-151)||(15019445-15019595)
chr4 (1-137)||(13518136-13518272)
chr4 (1-165)||(39488298-39488462)
chr4 (4-146)||(19458004-19458146)
chr4 (1-147)||(19459702-19459848)
chr4 (1-111)||(19460552-19460660)
chr4 (1-147)||(19456297-19456438)
chr4 (64-145)||(24663583-24663664)
chr4 (34-147)||(22474101-22474214)
chr4 (68-147)||(21484620-21484699)
[»] chr1 (4 HSPs)
chr1 (1-149)||(36233677-36233825)
chr1 (1-165)||(24157204-24157366)
chr1 (1-147)||(20190596-20190742)
chr1 (1-68)||(20189042-20189109)
[»] chr7 (5 HSPs)
chr7 (1-168)||(7843048-7843214)
chr7 (1-165)||(9595585-9595748)
chr7 (1-165)||(9646548-9646711)
chr7 (1-137)||(9647111-9647247)
chr7 (69-137)||(9596148-9596216)
[»] chr8 (1 HSPs)
chr8 (1-168)||(8366479-8366645)
[»] chr2 (1 HSPs)
chr2 (1-168)||(22300042-22300208)
[»] scaffold0269 (1 HSPs)
scaffold0269 (1-141)||(1575-1715)
[»] chr3 (3 HSPs)
chr3 (1-70)||(25532008-25532077)
chr3 (38-150)||(2693788-2693903)
chr3 (32-91)||(2683933-2683989)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29949956 - 29950117
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29949956 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 29950055  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  29950056 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaagaagttgaat 29950117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29951594 - 29951755
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29951594 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 29951693  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  29951694 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaagaagttgaat 29951755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 244753 - 244603
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  244753 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 244654  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  244653 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa 244603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 27401975 - 27402071
Alignment:
Q  54 aattagtggttgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 150  Q
    ||||||||| |||||||  ||||||||||| ||||||||||| |||||  |||| |||||| ||| |||||||| ||||||| ||||||||||||||    
T  27401975 aattagtggctgcatttattttcattttctgagagttttagaatcaaagccatcttgtaattagcccatataaaaagagcacaaaaatgatatgaaa 27402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 9167025 - 9167188
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9167025 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttggatttcctttcattttctaagagttttagagtcaa 9167124  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaatttt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  9167125 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa-gaagttgaatttt 9167188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 15017955 - 15017805
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15017955 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcattttctttcattttctaagagttttagagtcaa 15017856  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15017855 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa 15017805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 15019595 - 15019445
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019595 gagtcattttgtaacatttcatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 15019496  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019495 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaa 15019445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 13518272 - 13518136
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13518272 gagtcattttgtaaccttttatttgcattaatcagccaccaaaaaattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 13518173  T
Q  101 aatcatcatgtaataagctcatataaatagagcacga 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  13518172 aatcatcatgtaataagctcatataaatagagcacga 13518136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 39488462 - 39488298
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39488462 gagtcattttgtaacctcttatttgcattaatcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 39488363  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaatttt 165  Q
    ||||| ||||||||| ||||||||| |||||||||||||||| ||||||||  |||| |||||||    
T  39488362 aatcaacatgtaatatgctcatatagatagagcacgaaaatgttatgaaaaaaaagtggaatttt 39488298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 19458004 - 19458146
Alignment:
Q  4 tcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaaaat 103  Q
    |||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||| | || ||||||||||||||||||||| ||||| |||||||    
T  19458004 tcattttgtaaccttttctttgcactaatcagccactaaaacattattggaattagtggctacacttcctttcattttctaagagtgttagaatcaaaat 19458103  T
Q  104 catcatgtaataagctcatataaatagagcacgaaaatgatat 146  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  19458104 catcatgtaataggctcatataaatagagcatgaaaatgatat 19458146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 19459702 - 19459848
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||| |||| |||| |||| |||||| |||| | ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  19459702 gagtcgttttataaccttttctttgcactaattaaccaccaaaacattattgcaattaatggatgcatttcctttcattttctaagagttttagaatcaa 19459801  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatg 147  Q
    ||| ||||||||||| | |||||||||||| ||||||||||||||||    
T  19459802 aataatcatgtaatatgttcatataaatagtgcacgaaaatgatatg 19459848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 19460660 - 19460552
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||  |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  19460660 gagtcattttgtaa--ttttttttgcattaatcaaccaccaaaacattattgtaattagtggctgcatttcatttcattttcaaagagttttagaatcaa 19460563  T
Q  101 aatcatcatgt 111  Q
    |||||||||||    
T  19460562 aatcatcatgt 19460552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 19456297 - 19456438
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    |||||||| ||||||||||| |||||| ||||||| | |||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||  |||    
T  19456297 gagtcattatgtaacattttctttgcactaatcagtc-ccaaaacattattgcaattagtagatgcatttcctttcattt-ctaagagttttagaaccaa 19456394  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatg 147  Q
    ||| ||    ||||||||||||||||||||||||||| |||||||||    
T  19456395 aattata---taataagctcatataaatagagcacgacaatgatatg 19456438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 24663664 - 24663583
Alignment:
Q  64 tgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgata 145  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  24663664 tgcatttccttttattttctaagagttttagaatcaaaatcatcatgtaataaaatcatataaatagagcacgaaaatgata 24663583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 22474101 - 22474214
Alignment:
Q  34 agccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagc 133  Q
    ||||||||||||||| |  |||||| |||||||||||||||| ||||||| ||||||| ||| | | ||  ||| |||||| || |||||||||||||||    
T  22474101 agccaccaaaacattgtgataattaatggttgcatttccttttattttcttagagtttcagaattagaactatcttgtaatgagttcatataaatagagc 22474200  T
Q  134 acgaaaatgatatg 147  Q
    ||||||||||||||    
T  22474201 acgaaaatgatatg 22474214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 21484699 - 21484620
Alignment:
Q  68 tttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatg 147  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||| |  || |||||||||||    
T  21484699 tttcctttcattttgtaagagttttagaatcaaaatcatcatgtaataaacgcatataaatacaatacaaaaatgatatg 21484620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 36233677 - 36233825
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36233677 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtgaa 36233776  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233777 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaa 36233825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 24157366 - 24157204
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  24157366 gagtcattttgtaaccttttatttgcattaatcagccaccaaaacattattgtaattagtggctgcatttgctttcattttctaagagttttagagtcaa 24157267  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaatttt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  24157266 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgtaaa--aagtagaatttt 24157204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 20190742 - 20190596
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20190742 gagtcattttgtaatcttttatttgcattaatcagccaccaaatcattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 20190643  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatg 147  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  20190642 aatcatcatgtaataacctcatataaatagatcacgaaaatgatatg 20190596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20189109 - 20189042
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcat 68  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20189109 gagtcattttgtaaccttttatttgcattaatcagccaccaaaacattattgtaattagtggttgcat 20189042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 7843048 - 7843214
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  7843048 gagtcattttgtaaccttttatttgcattaatcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagtttttgagtcaa 7843147  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaattttgat 168  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  7843148 aatcatcatgtaataagctcatataaatagagcacgaaaatggtatgtaaa-gaagtagaattttgat 7843214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 9595748 - 9595585
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9595748 gagtcattttgtaaacttttatttgaattaatcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 9595649  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaatttt 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  9595648 aatcatcatgtaataaactcatataaatagagcacgaaaatgatatgtaaa-gaagttgaatttt 9595585  T

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Target: chr7; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 9646711 - 9646548
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9646711 gagtcattttgtaaacttttatttgaattaatcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 9646612  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaatttt 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  9646611 aatcatcatgtaataaactcatataaatagagcacgaaaatgatatgtaaa-gaagttgaatttt 9646548  T

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Target: chr7; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9647247 - 9647111
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9647247 gagtcattttgtaaccttttatttgcattaatcagccaccaaaaaattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 9647148  T
Q  101 aatcatcatgtaataagctcatataaatagagcacga 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  9647147 aatcatcatgtaataagctcatataaatagagcacga 9647111  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 9596216 - 9596148
Alignment:
Q  69 ttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596216 ttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacga 9596148  T

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Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 8366479 - 8366645
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8366479 gagtcattttgtaacctcttatttgcattaatcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 8366578  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaattttgat 168  Q
    | || |||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  8366579 agtcctcatgtaataagctcatataaatagagcacgaaaatgatatgtaaa-caagtagaattttgat 8366645  T

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Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 22300208 - 22300042
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  22300208 gagtcattttgtaacctcttatttgcattaatcagccaccaaaacattattgtaattaatggctgcatttcctttcattttctaagagttttagagtcaa 22300109  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaaaggaagtagaattttgat 168  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  22300108 agtcatcatgtaataagctcatataaatagagcacgaaaatgatatgtaaa-caagtagaattttgat 22300042  T

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Target: scaffold0269 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 1715 - 1575
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  1715 gagtcattttgtaacctcttatttgcattaatcagccaccaaaacattattgtaattaatggctgcatttcctttcattttctaagagttttagagtcaa 1616  T
Q  101 aatcatcatgtaataagctcatataaatagagcacgaaaat 141  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  1615 aatcatcatgtaataagctcatataaatatagcacgaaaat 1575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25532008 - 25532077
Alignment:
Q  1 gagtcattttgtaacattttatttgcattaatcagccaccaaaacattattgtaattagtggttgcattt 70  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25532008 gagtcattttgtaacctcttatttgcattaatcagccaccaaaacattattgtaattagtggctgcattt 25532077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 2693788 - 2693903
Alignment:
Q  38 accaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaaaa---tcatcatgtaataagctcatataaatagagca 134  Q
    |||||||||| |||| ||||||||||||||||| |||| ||||||||||||||| ||| ||||||    ||||||||| ||||| || ||||| ||  ||    
T  2693788 accaaaacataattgcaattagtggttgcatttacttttattttctaagagtttcagaatcaaaacctgcatcatgtactaagcccacataaagaggaca 2693887  T
Q  135 cgaaaatgatatgaaa 150  Q
    ||||||||||||||||    
T  2693888 cgaaaatgatatgaaa 2693903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 2683933 - 2683989
Alignment:
Q  32 tcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttt 91  Q
    ||||||||||||||||||||| |||||   | ||||||||| ||||||||||||||||||    
T  2683933 tcagccaccaaaacattattgaaatta---gctgcatttccgttcattttctaagagttt 2683989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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