View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_10 (Length: 636)
Name: NF11813_low_10
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 623
Target Start/End: Complemental strand, 42224371 - 42223766
Alignment:
| Q |
18 |
gtatggacactgtacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgtcacgc |
117 |
Q |
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| T |
42224371 |
gtatggacactatacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgtcacgc |
42224272 |
T |
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| Q |
118 |
tcttcttgatttactctgatggcaacaaaaggctcaaggtccttatgtggctagttgttgaacttgttttcatcgcagctcttacatttgtcacgttgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42224271 |
tcttcttgatttactctgatggcaacaaaaggctcaaggtccttatgtggctagttgttgaactcgttttcatcgcagctcttacatttgtcacgttgag |
42224172 |
T |
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| Q |
218 |
ccttgttcacgacgtcacgaaacgctctgccattgttggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggtatgt |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224171 |
ccttgttcacgacgtcgcgaaacgctctgccattgttggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggtatgt |
42224072 |
T |
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| Q |
318 |
aatcatcaaacaaacacttaatcttaattttttgtttggaagcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaactggt |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224071 |
aatcatcaaacaaacacttaatcttaatttttggtttggatgcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaactggt |
42223972 |
T |
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| Q |
418 |
gatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttcgac |
517 |
Q |
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| T |
42223971 |
gatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttcgac |
42223872 |
T |
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| Q |
518 |
aaattcatcactgtaaacaagctaaatccnnnnnnnnnnnnnnnnnnnncctcgacatattgatgaaatagacgtaaagctaatgaatgaccattgctgt |
617 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42223871 |
aaattcatcactgtaaacaaactaaatccttttgctttttttcctttttcctcgacatattgatgaaatagacgtaaagctaatgaatgaccattgttgt |
42223772 |
T |
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| Q |
618 |
tgttct |
623 |
Q |
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|||||| |
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| T |
42223771 |
tgttct |
42223766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 36675871 - 36675959
Alignment:
| Q |
404 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
492 |
Q |
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||||||||||| ||||||| ||||||||| |||||| ||||||| | | | ||||| | ||||| ||||| |||||||| ||||||| |
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| T |
36675871 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36675959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 36685953 - 36686041
Alignment:
| Q |
404 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
492 |
Q |
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||||||||||| ||||||| ||||||||| |||||| ||||||| | | | ||||| | ||||| ||||| |||||||| ||||||| |
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| T |
36685953 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36686041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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