View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_11 (Length: 594)
Name: NF11813_low_11
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 31696535 - 31695984
Alignment:
| Q |
17 |
aatttataaggtggtcttgtttttaattttgtgatatagttggtcatttgaaacattttaattctgtgcataaccaatctcatccaatccattaaatatt |
116 |
Q |
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| T |
31696535 |
aattgataaggtggtcttgtttttaattttgtgatatagttggtcatttgaaacattttaattctgtgcataaccaatctcatccaatccattaaatatt |
31696436 |
T |
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| Q |
117 |
ggtgatccatttaagatcgaacggctaaaaacttaactattcttgtttttatattacgcaattaaaaaattaagatcgaacaattctcatttttaccaac |
216 |
Q |
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| T |
31696435 |
ggtgatccatttaagatggaacggctaaaaaattaactattctcatttgtatattacgcaattaaaaaattaagatcgaacgattctcatttttacaaac |
31696336 |
T |
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| Q |
217 |
gatctcaactcacttggttggcccggtgatattgacttagattggg-ataccacatctgaatcgacattgcagtaaattattatttacagtgatggatta |
315 |
Q |
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| T |
31696335 |
gatctcatctcacttggttggcccgatgatattgacttagattggggataccacatctgaatcgacattgcagtaaattattatttacactgatggatta |
31696236 |
T |
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| Q |
316 |
aatctgttaagagaaatagaaaacaattaacaaaaatggaaatggaaacttcagaagattgggaatatacaggcacagaagatgaacacatcccaatcga |
415 |
Q |
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| T |
31696235 |
aatctgttaagaggaatagaaaacaattaacaaaaatggaaatggaaacttcagaagattgggaatatacaggcacagaagatgaacacatcccaatcga |
31696136 |
T |
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| Q |
416 |
tctcttctgttccaaagaagacgcccaaattccacgtggcaccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaacatcaaccatcc |
515 |
Q |
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| T |
31696135 |
tctcttctgttccaaagaagacgcccgagttccacgtggcaccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaacatcaaccaccc |
31696036 |
T |
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| Q |
516 |
aatcccaaactcttgcttgattccaatgataatcctctattctccatccacc |
567 |
Q |
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| T |
31696035 |
aatcccaaactcttgcttgattccaatgataatcctctattctcaatccacc |
31695984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 523
Target Start/End: Complemental strand, 31690026 - 31689861
Alignment:
| Q |
355 |
aaatggaaacttcagaagattgggaatatacaggcacagaagatgaacacatcccaatcgatctcttctgttccaaagaagacgcccaaattccacgtgg |
454 |
Q |
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| T |
31690026 |
aaatggaaacttcaga---tttggagtacacaggcaccgaagatcaacacatcccaatcgatcttttcggttccaaaaaacacgccggagttccacgtgg |
31689930 |
T |
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| Q |
455 |
caccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaacatcaaccatccaatcccaa |
523 |
Q |
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| T |
31689929 |
catcctagcgtttacagatgcatcggggaacatagtcttcaaggtgcaccgtcaaccacccgatcccaa |
31689861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 570
Target Start/End: Complemental strand, 31689835 - 31689787
Alignment:
| Q |
522 |
aaactcttgcttgattccaatgataatcctctattctccatccaccgtc |
570 |
Q |
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| T |
31689835 |
aaactcttgcttgattccaatgataatcctctgttttccatccaccgtc |
31689787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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