View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_low_12 (Length: 584)

Name: NF11813_low_12
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_low_12
NF11813_low_12
[»] scaffold0393 (1 HSPs)
scaffold0393 (69-571)||(12061-12563)
[»] chr3 (19 HSPs)
chr3 (69-357)||(2409755-2410035)
chr3 (411-571)||(2410026-2410186)
chr3 (385-512)||(52925681-52925807)
chr3 (401-509)||(3845198-3845305)
chr3 (372-449)||(35132330-35132406)
chr3 (374-450)||(41115422-41115497)
chr3 (384-510)||(39256566-39256691)
chr3 (381-450)||(33548193-33548262)
chr3 (374-450)||(43987611-43987687)
chr3 (375-443)||(48411007-48411075)
chr3 (333-420)||(4194008-4194094)
chr3 (395-446)||(54596772-54596823)
chr3 (386-452)||(38626642-38626707)
chr3 (381-425)||(7717388-7717431)
chr3 (382-450)||(35284254-35284322)
chr3 (411-450)||(21513425-21513464)
chr3 (318-440)||(48089693-48089815)
chr3 (384-441)||(1114654-1114711)
chr3 (182-215)||(42252188-42252221)
[»] chr6 (17 HSPs)
chr6 (374-510)||(29240511-29240646)
chr6 (381-512)||(6544565-6544695)
chr6 (374-450)||(33141766-33141842)
chr6 (381-446)||(5724697-5724761)
chr6 (392-494)||(34620793-34620894)
chr6 (392-494)||(34748230-34748331)
chr6 (384-449)||(2234283-2234348)
chr6 (383-447)||(26550631-26550695)
chr6 (383-450)||(33997148-33997215)
chr6 (396-450)||(26550469-26550523)
chr6 (318-447)||(1485150-1485278)
chr6 (402-511)||(33136570-33136677)
chr6 (392-444)||(2008579-2008631)
chr6 (384-444)||(13687547-13687607)
chr6 (383-423)||(24974192-24974232)
chr6 (374-450)||(26280555-26280630)
chr6 (384-428)||(32943723-32943767)
[»] chr2 (22 HSPs)
chr2 (69-170)||(39961731-39961832)
chr2 (318-449)||(11510904-11511034)
chr2 (375-477)||(33502909-33503010)
chr2 (268-440)||(38129420-38129591)
chr2 (374-509)||(37561599-37561732)
chr2 (318-479)||(44439172-44439335)
chr2 (318-414)||(5977166-5977263)
chr2 (374-450)||(4908739-4908815)
chr2 (375-450)||(36987172-36987247)
chr2 (389-450)||(7630366-7630427)
chr2 (385-439)||(14110638-14110692)
chr2 (381-430)||(3476496-3476545)
chr2 (373-457)||(1101946-1102030)
chr2 (381-452)||(680344-680414)
chr2 (411-450)||(39702528-39702567)
chr2 (413-506)||(9943318-9943410)
chr2 (435-512)||(42982443-42982519)
chr2 (381-425)||(2002762-2002805)
chr2 (381-425)||(7629845-7629889)
chr2 (392-424)||(33502223-33502255)
chr2 (381-425)||(36979122-36979166)
chr2 (348-436)||(40959682-40959770)
[»] chr7 (13 HSPs)
chr7 (349-450)||(45369112-45369213)
chr7 (407-505)||(48290287-48290384)
chr7 (318-450)||(45004970-45005101)
chr7 (375-450)||(21436060-21436135)
chr7 (384-430)||(40422762-40422808)
chr7 (407-450)||(12306684-12306727)
chr7 (404-450)||(29829445-29829491)
chr7 (482-513)||(33504568-33504599)
chr7 (374-448)||(7087351-7087425)
chr7 (404-450)||(12306927-12306973)
chr7 (348-389)||(3141112-3141153)
chr7 (348-425)||(5489880-5489956)
chr7 (188-247)||(3150456-3150516)
[»] chr5 (19 HSPs)
chr5 (384-504)||(10898619-10898738)
chr5 (381-512)||(29922783-29922913)
chr5 (383-451)||(29922575-29922643)
chr5 (405-450)||(38045399-38045444)
chr5 (371-450)||(33608452-33608532)
chr5 (370-423)||(7667586-7667639)
chr5 (375-447)||(10161779-10161851)
chr5 (362-450)||(13224666-13224753)
chr5 (348-450)||(1105389-1105492)
chr5 (378-448)||(11132849-11132919)
chr5 (381-423)||(42439684-42439726)
chr5 (374-450)||(12208901-12208978)
chr5 (325-404)||(38822275-38822354)
chr5 (390-452)||(9952693-9952755)
chr5 (392-446)||(27374368-27374422)
chr5 (374-431)||(7668083-7668139)
chr5 (404-448)||(11134290-11134334)
chr5 (374-450)||(35439065-35439141)
chr5 (388-420)||(37121565-37121597)
[»] chr8 (15 HSPs)
chr8 (370-450)||(40881049-40881129)
chr8 (353-450)||(11038132-11038229)
chr8 (402-510)||(41614735-41614842)
chr8 (375-450)||(5997343-5997418)
chr8 (370-507)||(32056259-32056394)
chr8 (379-510)||(35495151-35495280)
chr8 (404-450)||(29979506-29979552)
chr8 (370-450)||(8252747-8252827)
chr8 (374-450)||(13929765-13929842)
chr8 (407-448)||(36447962-36448003)
chr8 (182-222)||(19006174-19006214)
chr8 (402-449)||(38386309-38386356)
chr8 (401-450)||(34469252-34469301)
chr8 (409-450)||(38524107-38524147)
chr8 (381-450)||(39648406-39648475)
[»] chr4 (27 HSPs)
chr4 (384-450)||(25318997-25319063)
chr4 (381-513)||(29468698-29468829)
chr4 (373-449)||(2171738-2171814)
chr4 (395-510)||(2635054-2635168)
chr4 (348-502)||(8330013-8330167)
chr4 (374-430)||(18597009-18597065)
chr4 (390-450)||(33560646-33560706)
chr4 (371-446)||(9082879-9082953)
chr4 (370-444)||(2206399-2206473)
chr4 (460-510)||(47596440-47596490)
chr4 (381-418)||(11271604-11271641)
chr4 (348-425)||(26617443-26617519)
chr4 (381-445)||(54705457-54705521)
chr4 (386-449)||(471938-472001)
chr4 (383-442)||(1455633-1455692)
chr4 (374-425)||(32818430-32818480)
chr4 (381-420)||(52063117-52063156)
chr4 (374-420)||(44845726-44845772)
chr4 (348-450)||(51093208-51093309)
chr4 (409-446)||(22250180-22250217)
chr4 (381-450)||(22683813-22683882)
chr4 (435-510)||(50375572-50375644)
chr4 (387-443)||(4451413-4451469)
chr4 (374-450)||(9134560-9134635)
chr4 (375-415)||(26617193-26617233)
chr4 (382-450)||(35995178-35995246)
chr4 (404-444)||(49138851-49138891)
[»] chr1 (15 HSPs)
chr1 (348-446)||(48635225-48635322)
chr1 (381-450)||(32088640-32088708)
chr1 (370-452)||(51158469-51158551)
chr1 (381-508)||(6021695-6021822)
chr1 (376-450)||(15452436-15452510)
chr1 (371-505)||(41516883-41517016)
chr1 (395-446)||(646134-646185)
chr1 (411-450)||(18325187-18325226)
chr1 (458-509)||(20721057-20721108)
chr1 (382-448)||(404121-404187)
chr1 (374-424)||(5268194-5268244)
chr1 (381-423)||(5407777-5407819)
chr1 (381-431)||(52013545-52013594)
chr1 (318-446)||(20026168-20026296)
chr1 (366-450)||(12655194-12655278)
[»] scaffold0168 (1 HSPs)
scaffold0168 (381-509)||(31718-31844)


Alignment Details
Target: scaffold0393 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 69 - 571
Target Start/End: Original strand, 12061 - 12563
Alignment:
Q  69 cttcttcattcaacagatttggggtccatttcaattgaatagtttaaaacttggttaaagattatttatatgatttttacttatacacacatcttttgaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12061 cttcttcattcaacagatttggggtccatttcaattgaatagtttaaaacttggttaaagattatttatatgatttttacttatgcacacatcttttgaa 12160  T
Q  169 atacttgctaaagtgtagcaccgacactttagattgaaggcatgtcagtgtcggacaccgacatatgcggttacatttattgtatgtttggttttgtgag 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  12161 atacttgctaaagtgtagcaccgacactttagattgaaggcatgtcgatgtcagacaccgacatatgtggttacatttattgtatgtttggttttgtgag 12260  T
Q  269 acaaaaaatgattttgaatggattgattgtataaaatttgattctgatgaaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaa 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  12261 acaaaaaatgattttgaatggattgattgtataaaatttgattctgatgaaagtgagttgaacaataaattagaggcggaacgtcaattatataggtaaa 12360  T
Q  369 tgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttag 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12361 tgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttag 12460  T
Q  469 aaacaattttgattcctccaaaagtgaaatcaaacatacactaatcactttcattttctcaaatttgtgtctgcgtttacatgttagtgtcctgttcgtg 568  Q
    |||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12461 aaacaattttgactcctccaaaagtgaaatcaaacataaagtaatcactttcattttctcaaatttgtgtctgcgtttacatgttagtgtcctgttcgtg 12560  T
Q  569 tct 571  Q
    |||    
T  12561 tct 12563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 2409755 - 2410035
Alignment:
Q  69 cttcttcattcaacagatttggggtccatttcaattgaatagtttaaaacttggttaaagattatttatatgatttttacttatacacacatcttttgaa 168  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || ||    |||||||| |||| ||||||||| |||||||    
T  2409755 cttcttcattcaacatatttggggtccatttcaattgaatagtttaaaactaggttatatatcat----atgattttaacttgtacacacattttttgaa 2409850  T
Q  169 atacttgctaaagtgtagcaccgacactttagattgaaggcatgtcagtgtcggacaccgacatatgcggttacatttattgtatgtttggttttgtgag 268  Q
    ||| |||| | |||||||||| ||| ||||||||||||||||     ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  2409851 atatttgccacagtgtagcactgactctttagattgaaggca----cgtgtcagacaccgacatatgtggttacatttattgtatgtttggttttgtgag 2409946  T
Q  269 acaaaaaatgattttgaatggattgattgtataaaatttgattctgatgaaagtgagttgaacaataaattagaggcggaaaatcaatt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2409947 acaaaaaatgattttgaatggattgattgtataaaatttgattctgatgaaagtgagttgaacaataaatttgaggcggaaaatcaatt 2410035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 411 - 571
Target Start/End: Original strand, 2410026 - 2410186
Alignment:
Q  411 aaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacact 510  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  2410026 aaaatcaattctacttgagaacatccaaacatgtcaaaataaatttttacacctttagaaacaattttgactccaccaaaagtgaaatcaaacatacact 2410125  T
Q  511 aatcactttcattttctcaaatttgtgtctgcgtttacatgttagtgtcctgttcgtgtct 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2410126 aatcactttcattttctcaaatttgtgtctgcgtttacatgttagtgtcctgtttgtgtct 2410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 385 - 512
Target Start/End: Original strand, 52925681 - 52925807
Alignment:
Q  385 ttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcc 484  Q
    ||||||||||||||| || ||||||||||||  ||||||| ||||| || |||||||||||||||| |  || ||||||| ||||| ||||||||| |||    
T  52925681 ttcaagttagaatcagttatggaggcaaaattgattctacgtgagagcaaccaaacatgtcaaaatca-attatacacctctagaatcaattttgactcc 52925779  T
Q  485 tccaaaagtgaaatcaaacatacactaa 512  Q
    |||||||||| || | ||||||||||||    
T  52925780 tccaaaagtggaaccgaacatacactaa 52925807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 3845198 - 3845305
Alignment:
Q  401 ttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatca 500  Q
    |||| |||||| |||||||||||||||||| ||  ||||||||||||||| |  || ||||||| ||||| |||||||| || ||||||||||| || ||    
T  3845198 ttctagaggcagaatcaattctacttgagatcaaacaaacatgtcaaaatca-attctacacctctagaatcaattttggttactccaaaagtggaacca 3845296  T
Q  501 aacatacac 509  Q
    |||||||||    
T  3845297 aacatacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 35132330 - 35132406
Alignment:
Q  372 tccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 449  Q
    |||||||||||||||||||  |||||| ||||| |||  ||||||||||||| |||| ||||||||||||||||||||    
T  35132330 tccaaattgtagcttcaagcaagaatc-tttctcgagaaaaaatcaattctaattgataacatccaaacatgtcaaaa 35132406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 41115422 - 41115497
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| ||||||||||| ||||||| ||||  | |||||||||||||||||| | |||||||||||||||||||||    
T  41115422 caaattctagcttcaagt-agaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaaaat 41115497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 510
Target Start/End: Complemental strand, 39256691 - 39256566
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattc 483  Q
    |||||||| |||| || || ||||| |||| ||||||||||||||||  |  ||||||||||||||| |  || ||||||| |||||  ||||||||||     
T  39256691 cttcaagtcagaaacaattttggagtcaaagtcaattctacttgagagtaatcaaacatgtcaaaatca-attctacacctctagaactaattttgattt 39256593  T
Q  484 ctccaaaagtgaaatcaaacatacact 510  Q
    ||||||||||| || |||||| |||||    
T  39256592 ctccaaaagtggaaccaaacacacact 39256566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 33548262 - 33548193
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||||  || || ||| |||||||||||||||| | | |||||||||||||||||||    
T  33548262 tagcttcaagttagaatccattttgaaggaaaaatcaattctacttaatagcatccaaacatgtcaaaat 33548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 43987611 - 43987687
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| ||||||| |||||||||   ||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  43987611 caaattctagcttccagttagaattgattctgtagacaaaatcaattgtactcaagaacatccaaacatgtcaaaat 43987687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 48411075 - 48411007
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatg 443  Q
    ||||| || |||||||||||||||| |||| |||||||||| || |||||| |||||||| ||||||||    
T  48411075 aaattttaacttcaagttagaatcaattctagaggcaaaattaaatctactcgagaacattcaaacatg 48411007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 4194008 - 4194094
Alignment:
Q  333 ataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaatt 420  Q
    |||||||||||||  |||||||||| || ||| |||  || |||||| |||||| |||||||||||| |||||||||| |||||||||    
T  4194008 ataaattagaggctaaaaatcaattgtagaggcaaacacttcaaattctagctt-aagttagaatcaattctggaggccaaatcaatt 4194094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 446
Target Start/End: Complemental strand, 54596823 - 54596772
Alignment:
Q  395 aatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    |||||||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  54596823 aatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgtca 54596772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 38626707 - 38626642
Alignment:
Q  386 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 452  Q
    |||||||| ||||| |||  ||||||||||||||| |||| || |||||||||||||||||||||||    
T  38626707 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataa 38626642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 7717388 - 7717431
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  7717388 tagcttcaagt-agaatcaattctggaggcaaaatcaattctact 7717431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 35284322 - 35284254
Alignment:
Q  382 agcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||| ||| ||||||||||| ||||| || |  ||||||| |||| ||||||||||    
T  35284322 agcttcaagttagaatcttttttggaggcaaaagcaattataatcaagaacatacaaatatgtcaaaat 35284254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 21513425 - 21513464
Alignment:
Q  411 aaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  21513425 aaaatcaattctacttgagaacatccaagcatgttaaaat 21513464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 440
Target Start/End: Original strand, 48089693 - 48089815
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatca 417  Q
    |||||| |||||||||||| || |||||  ||||||| || || ||| ||| ||| ||| || || |||||| |||||||   ||| ||||| ||| |||    
T  48089693 aaagtgggttgaacaataactttgaggctaaaaatcatttgtagaggcaaaagcttcaagttctaacttcaaattagaattgattccggaggtaaattca 48089792  T
Q  418 attctacttgagaacatccaaac 440  Q
    ||| |||| ||||||||||||||    
T  48089793 attttactcgagaacatccaaac 48089815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 1114711 - 1114654
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaaca 441  Q
    |||||||||||||||| ||  | |||||||||||||||| || || ||||||||||||    
T  1114711 cttcaagttagaatcaatttcgaaggcaaaatcaattctgctagaaaacatccaaaca 1114654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 42252188 - 42252221
Alignment:
Q  182 tgtagcaccgacactttagattgaaggcatgtca 215  Q
    |||||||||||||||| |||||||||||||||||    
T  42252188 tgtagcaccgacacttcagattgaaggcatgtca 42252221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 374 - 510
Target Start/End: Original strand, 29240511 - 29240646
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaaca 473  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||||||||||| || |||| ||||||||||||| |  |||||||||| ||||| ||    
T  29240511 caaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatca-attttacacctctagaatca 29240609  T
Q  474 attttgattcctccaaaagtgaaatcaaacatacact 510  Q
    ||||||||||| ||||||||| || ||||||||||||    
T  29240610 attttgattcccccaaaagtggaaccaaacatacact 29240646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 512
Target Start/End: Original strand, 6544565 - 6544695
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttga 480  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||  || | |||||||||||  |||||||||| ||||| |||||||      
T  6544565 tagcttcaagttagaatcaattctgaaggcaaaatcaattttacttgaaaacattaaagcttgtcaaaataa-attttacacctatagaatcaatttttc 6544663  T
Q  481 ttcctccaaaagtgaaatcaaacatacactaa 512  Q
     ||||||||| |||||| ||||||| ||||||    
T  6544664 ctcctccaaatgtgaaaccaaacattcactaa 6544695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 33141766 - 33141842
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| ||| ||| ||||||||||| ||||||||| |||||||||| ||||||||| || |||||||| |||||||    
T  33141766 caaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaaccaaacatatcaaaat 33141842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 5724697 - 5724761
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| ||| | |||||||||||||||    
T  5724697 tagcttcaagt-agaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtca 5724761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 494
Target Start/End: Complemental strand, 34620894 - 34620793
Alignment:
Q  392 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaa 491  Q
    |||||||| ||| ||||||||||| ||||||| || | |  | |||||||||||||||| | || | |||||||||||| ||||||||  ||||||||||    
T  34620894 tagaatcaattccggaggcaaaattaattctagtttataggaaccaaacatgtcaaaatcaattct-acacctttagaatcaattttgggtcctccaaaa 34620796  T
Q  492 gtg 494  Q
    |||    
T  34620795 gtg 34620793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 494
Target Start/End: Complemental strand, 34748331 - 34748230
Alignment:
Q  392 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaa 491  Q
    |||||||| ||| ||||||||||| ||||||| || | |  | |||||||||||||||| | || | |||||||||||| ||||||||  ||||||||||    
T  34748331 tagaatcaattccggaggcaaaattaattctagtttataggaaccaaacatgtcaaaatcaattct-acacctttagaatcaattttgggtcctccaaaa 34748233  T
Q  492 gtg 494  Q
    |||    
T  34748232 gtg 34748230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 2234283 - 2234348
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 449  Q
    ||||| |||||||||| ||| |||||||||||||||||||||  ||| || |||||||| ||||||    
T  2234283 cttcatgttagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaacatatcaaaa 2234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 26550695 - 26550631
Alignment:
Q  383 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 447  Q
    |||||||| || ||||| |||| ||| |||||||||||||| ||||| ||| |||||||||||||    
T  26550695 gcttcaagataaaatcaattctagagacaaaatcaattctagttgagtacaaccaaacatgtcaa 26550631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 33997215 - 33997148
Alignment:
Q  383 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||| || || |||||||||||||  | |||||||  | ||||||||||||||||    
T  33997215 gcttcaagttagaatcaattgtgaaggcaaaatcaataatgcttgagagaaaccaaacatgtcaaaat 33997148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 450
Target Start/End: Complemental strand, 26550523 - 26550469
Alignment:
Q  396 atcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||| |||| ||| |||||||||||||| ||||| ||| ||||||||||||||||    
T  26550523 atcaattctagagacaaaatcaattctagttgagtacaaccaaacatgtcaaaat 26550469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 447
Target Start/End: Original strand, 1485150 - 1485278
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatca 417  Q
    |||||||||||||||||||||| |||    |||||||||| || |   ||| ||||||| || ||| |||||| |||||||| ||||  ||||||||| |    
T  1485150 aaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaag-tagaatcaattctaaaggcaaaatta 1485248  T
Q  418 attctacttgagaacatccaaacatgtcaa 447  Q
    ||||||||  ||| ||  ||||||||||||    
T  1485249 attctactcaagagcaaacaaacatgtcaa 1485278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 511
Target Start/End: Original strand, 33136570 - 33136677
Alignment:
Q  402 tctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaa 501  Q
    |||||||| |||||||||| |||| |||| || |||||||||||||||| |  || ||||||| |||||  |||||||  |  ||||||||||||| |||    
T  33136570 tctggaggtaaaatcaattatactcgagagcaaccaaacatgtcaaaatca-attatacacctctagaattaattttggct-ttccaaaagtgaaaccaa 33136667  T
Q  502 acatacacta 511  Q
    | ||||||||    
T  33136668 atatacacta 33136677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 2008579 - 2008631
Alignment:
Q  392 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgt 444  Q
    |||||| | ||||||||||||||||||||||||| || | || ||||||||||    
T  2008579 tagaattaattctggaggcaaaatcaattctactagaaagcaaccaaacatgt 2008631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 13687607 - 13687547
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgt 444  Q
    |||||||||||||||| |  || ||||||| || |||||||| ||||||||| ||||||||    
T  13687607 cttcaagttagaatcaatcatgaaggcaaattctattctactcgagaacatctaaacatgt 13687547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 24974232 - 24974192
Alignment:
Q  383 gcttcaagttagaatcatttctggaggcaaaatcaattcta 423  Q
    |||||| |||||||||| || ||||||||||||||||||||    
T  24974232 gcttcatgttagaatcaattttggaggcaaaatcaattcta 24974192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 450
Target Start/End: Complemental strand, 26280630 - 26280555
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| |||||||||||  |||||| |||| |||||||||||||||||||   | ||||  |||||||||||||||    
T  26280630 caaattctagcttcaagtg-gaatcaattcttgaggcaaaatcaattctaccaaaaaacaatcaaacatgtcaaaat 26280555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 32943723 - 32943767
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttga 428  Q
    |||||||||||||||  |||| ||||||||| |||||||||||||    
T  32943723 cttcaagttagaatcgattctagaggcaaaagcaattctacttga 32943767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 39961832 - 39961731
Alignment:
Q  69 cttcttcattcaacagatttggggtccatttcaattgaatagtttaaaacttggttaaagattatttatatgatttttacttatacacacatcttttgaa 168  Q
    ||||||||||||||| |||| || |  |||||||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||| |||||||    
T  39961832 cttcttcattcaacaaattttggatttatttcaattgaatagtttaaaactaggttaaagatcatgtatatgatttgtacttatacacacattttttgaa 39961733  T
Q  169 at 170  Q
    ||    
T  39961732 at 39961731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 449
Target Start/End: Complemental strand, 11511034 - 11510904
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatca 417  Q
    |||||| ||||||||||||||| ||||   ||||| |||| || ||| |||  ||||||||| |||||||||| ||||||||  | ||||||||||||||    
T  11511034 aaagtgggttgaacaataaatttgaggtt-aaaataaattgtagaggcaaaaactccaaattctagcttcaagatagaatcaaatatggaggcaaaatca 11510936  T
Q  418 attctacttgagaacatccaaacatgtcaaaa 449  Q
    |||||||| || ||||||||||||| ||||||    
T  11510935 attctactcgaaaacatccaaacatatcaaaa 11510904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 33502909 - 33503010
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaa 474  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||| || |||| |||| || |||||||||||||||| |  ||||||||||| |||| |||    
T  33502909 aaattctagcttcaagttagaatcaattctggatgcaaaatcagttttactcgagagcaaccaaacatgtcaaaatca-attttacaccttcagaatcaa 33503007  T
Q  475 ttt 477  Q
    |||    
T  33503008 ttt 33503010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 440
Target Start/End: Original strand, 38129420 - 38129591
Alignment:
Q  268 gacaaaaaatgattttgaatggattgattgtataaaatttgattctga-tgaaagtgagttgaacaataaattagaggcggaaaatcaattatataggta 366  Q
    |||||||| |||||||||||| ||||||| | ||||||  |||||| | | |||||||| ||||||||||||| |||||  ||||||||||  || || |    
T  38129420 gacaaaaattgattttgaatgaattgattctgtaaaatg-gattctaactaaaagtgagatgaacaataaatttgaggctaaaaatcaattgcat-ggca 38129517  T
Q  367 aatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaac 440  Q
    || |||| ||||||||||||  ||||||||||| ||||  | ||||||| ||||||||| |||||  |||||||    
T  38129518 aaagctcgaaattgtagctttgagttagaatcaattctaaaagcaaaatgaattctactcgagaaagtccaaac 38129591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 509
Target Start/End: Complemental strand, 37561732 - 37561599
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaaca 473  Q
    ||||| |||| ||||||||||||||| || | ||||||||||||| |||||||||| | || ||||||||||||||| |  |||||||||| ||||| ||    
T  37561732 caaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgagga-attcaaacatgtcaaaatca-attttacacctctagaatca 37561635  T
Q  474 attttgattcctccaaaagtgaaatcaaacatacac 509  Q
    |||  |  || ||||||| ||||| |||||||||||    
T  37561634 attccgcctcatccaaaattgaaaccaaacatacac 37561599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 479
Target Start/End: Complemental strand, 44439335 - 44439172
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatca---tttctggaggcaaaa 414  Q
    |||||||||||||||||||||| |||    |||||||||| || |   ||| |||||||||| |||||||||||||||||||    |||| |||||||||    
T  44439335 aaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattcttctagaggcaaaa 44439236  T
Q  415 tcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttg 479  Q
    |||||| | || |||  || |||||||||||||||| |  ||  |||||||||||| ||||||||    
T  44439235 tcaattttcctggagggcaaccaaacatgtcaaaatta-attcaacacctttagaatcaattttg 44439172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 414
Target Start/End: Complemental strand, 5977263 - 5977166
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaat-gctccaaattgtagcttcaagttagaatcatttctggaggcaaaa 414  Q
    |||||||| ||||||||||||| ||||   |||||||| |||| ||| |||  |||||||||| ||||||||||||||||||| || |||||||||||    
T  5977263 aaagtgaggtgaacaataaatttgaggttaaaaatcaaatatagaggcaaaaagctccaaattttagcttcaagttagaatcaattatggaggcaaaa 5977166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 450
Target Start/End: Complemental strand, 4908815 - 4908739
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| |||||| |||||||||| | ||| | ||||||||||||||||||| || ||||| |||||||||||||||    
T  4908815 caaattttagctttaagttagaataaattcggaaggcaaaatcaattctactcgaaaacatacaaacatgtcaaaat 4908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 36987172 - 36987247
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||| || |||||||||||||||||||||||| |||||||||||| ||||  | |  ||||||||||||||||||    
T  36987172 aaattctaacttcaagttagaatcatttctggaagcaaaatcaattatactcaaaagaatccaaacatgtcaaaat 36987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 7630427 - 7630366
Alignment:
Q  389 agttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||  | |||||||||||||||||||||||||| | || ||||||||||||||||    
T  7630427 agttagaatctatcctggaggcaaaatcaattctacttgaaagcaaccaaacatgtcaaaat 7630366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 14110692 - 14110638
Alignment:
Q  385 ttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaa 439  Q
    ||||||||||||||| ||||  ||||||| ||||||| |||||||||||||||||    
T  14110692 ttcaagttagaatcaattctaaaggcaaattcaattcaacttgagaacatccaaa 14110638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 3476496 - 3476545
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 430  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| ||||    
T  3476496 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgaga 3476545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 457
Target Start/End: Complemental strand, 1102030 - 1101946
Alignment:
Q  373 ccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttt 457  Q
    ||||||| ||| || ||||||||||||  || ||||||||||||||||||||| |||  || ||||| || ||||||||| ||||    
T  1102030 ccaaattctagttttaagttagaatcaaatcaggaggcaaaatcaattctactcgagtgcaaccaaaaatttcaaaataaatttt 1101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 680344 - 680414
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 452  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || | || | ||||||||||||||||    
T  680344 tagcttcaagt-agaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgtcaaaataa 680414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 39702528 - 39702567
Alignment:
Q  411 aaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  39702528 aaaatcaattctactcgagaacatacaaacatgtcaaaat 39702567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 506
Target Start/End: Complemental strand, 9943410 - 9943318
Alignment:
Q  413 aatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacata 506  Q
    |||||||||||  ||||| || |||||||||| ||||| | |||| ||||||| |||| |||||||| || ||||||| ||| || ||||||||    
T  9943410 aatcaattctaagtgagagcaaccaaacatgttaaaatcaatttt-acaccttcagaatcaattttggttgctccaaatgtggaaccaaacata 9943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 512
Target Start/End: Complemental strand, 42982519 - 42982443
Alignment:
Q  435 ccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacactaa 512  Q
    |||||||||||||||| | || | |||  |||||||  ||||| |||||||||||||||| || ||||||||||||||    
T  42982519 ccaaacatgtcaaaatcagttct-acatgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaa 42982443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 2002762 - 2002805
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||    
T  2002762 tagcttcaagt-agaatcaggtctggaggcaaaatcaattctact 2002805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 7629889 - 7629845
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    ||||||||||||||||||| ||||||||| ||| | |||||||||    
T  7629889 tagcttcaagttagaatcaattctggaggaaaagtgaattctact 7629845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 33502255 - 33502223
Alignment:
Q  392 tagaatcatttctggaggcaaaatcaattctac 424  Q
    |||||||| ||||||||||||||||||||||||    
T  33502255 tagaatcaattctggaggcaaaatcaattctac 33502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 36979166 - 36979122
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    |||||||||||||| |||| ||||| ||||||||| |||||||||    
T  36979166 tagcttcaagttagtatcaattctgaaggcaaaataaattctact 36979122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 40959682 - 40959770
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatcc 436  Q
    ||||||||||||| ||  ||| |||||||| |||||| |||||||||||| | || | ||| | | |||||||||||  ||||||||||    
T  40959682 aaaatcaattatagagacaaaagctccaaactgtagcatcaagttagaattaattttagagactacatcaattctacaagagaacatcc 40959770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 349 - 450
Target Start/End: Complemental strand, 45369213 - 45369112
Alignment:
Q  349 aaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 448  Q
    ||||||||| || ||| ||| ||||| |||| ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||| |||||    
T  45369213 aaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaa 45369114  T
Q  449 at 450  Q
    ||    
T  45369113 at 45369112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 505
Target Start/End: Complemental strand, 48290384 - 48290287
Alignment:
Q  407 aggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacat 505  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| | |||  | |||| |  || ||||||||  ||||||||||||||||||||||||    
T  48290384 aggcaaaatcaattctgcttgaaaacatccaaacatgtcaaaatcaatttcca-acctatgaaatcaattttgtatcctccaaaagtgaaatcaaacat 48290287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 450
Target Start/End: Complemental strand, 45005101 - 45004970
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatca 417  Q
    ||||||||||||| |||||||| |||    || ||||||| ||||   |||  |||||| || ||||||||||| ||||||| ||||| |||||||||||    
T  45005101 aaagtgagttgaataataaatttgagtgctaagatcaattctataatcaaagcctccaatttttagcttcaagt-agaatcaattctgaaggcaaaatca 45005003  T
Q  418 attctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| | |||| || ||||||||||||||||    
T  45005002 attctattcgagagcaaccaaacatgtcaaaat 45004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 21436060 - 21436135
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||| ||||||||||||| ||||| |||| |||| ||||| ||||||||| ||||||||  ||||||||||||||    
T  21436060 aaattctagcttcaagttaaaatcaattctcgaggtaaaataaattctactcgagaacattaaaacatgtcaaaat 21436135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 40422808 - 40422762
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 430  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||    
T  40422808 cttcaagttagaatcaattcttgaggcaaaatcaattctacttgaga 40422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 407 - 450
Target Start/End: Complemental strand, 12306727 - 12306684
Alignment:
Q  407 aggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  12306727 aggcaaaatcaattctacttgagagcaaccaaacatgtcaaaat 12306684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 29829445 - 29829491
Alignment:
Q  404 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  29829445 tggaggcaaaatcaattctacttgagagcatccaagcatgacaaaat 29829491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 513
Target Start/End: Original strand, 33504568 - 33504599
Alignment:
Q  482 tcctccaaaagtgaaatcaaacatacactaat 513  Q
    ||||||||||||||||||||||||||||||||    
T  33504568 tcctccaaaagtgaaatcaaacatacactaat 33504599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 7087351 - 7087425
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 448  Q
    |||||| ||||||||||||| || || ||||  |  |||||||||||||||| || ||||| |||||||||||||    
T  7087351 caaattctagcttcaagttaaaaccaattctaaaaacaaaatcaattctactcgaaaacattcaaacatgtcaaa 7087425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 450
Target Start/End: Complemental strand, 12306973 - 12306927
Alignment:
Q  404 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||||||||  ||| || ||||||||||||||||    
T  12306973 tggaggcaaaatcaattctactcaagagcaaccaaacatgtcaaaat 12306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 3141112 - 3141153
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaa 389  Q
    ||||||||||||| ||||||| |||||||||| |||||||||    
T  3141112 aaaatcaattatacaggtaaaagctccaaattttagcttcaa 3141153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 5489880 - 5489956
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    |||||||||||||||   ||| ||||||| || |||| |||||| ||||||| || |||||||||||| |||||||||    
T  5489880 aaaatcaattatataatcaaaagctccaatttctagcatcaagt-agaatcaattttggaggcaaaattaattctact 5489956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 3150456 - 3150516
Alignment:
Q  188 accgacactttagattgaaggcatgtc-agtgtcggacaccgacatatgcggttacattta 247  Q
    ||||||| || |||||||||||||||  ||||| ||||||||||| | |||||||||||||    
T  3150456 accgacatttcagattgaaggcatgtttagtgttggacaccgacacacgcggttacattta 3150516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 504
Target Start/End: Complemental strand, 10898738 - 10898619
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattc 483  Q
    |||||||||||||||| |||| ||||||||||||||| |||| |||| || |||||||||||||||| |  ||  ||| || ||||| ||||||||||||    
T  10898738 cttcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaatta-attcgacagctctagaatcaattttgattc 10898640  T
Q  484 ctccaaaagtgaaatcaaaca 504  Q
    |||||||||||||||| ||||    
T  10898639 ctccaaaagtgaaatcgaaca 10898619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 512
Target Start/End: Complemental strand, 29922913 - 29922783
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttga 480  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||| || ||||||| |||||||||||||||| |  || |||||   ||||| |||||||||    
T  29922913 tagcttcaagttaaaatcaattcttgagacaaaatcaattctgctcgagaacaaccaaacatgtcaaaatca-attctacactactagaatcaattttga 29922815  T
Q  481 ttcctccaaaagtgaaatcaaacatacactaa 512  Q
     ||||| ||||||| ||  |||||||||||||    
T  29922814 ctcctcaaaaagtggaagtaaacatacactaa 29922783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 29922643 - 29922575
Alignment:
Q  383 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaata 451  Q
    ||||||||||| ||||| |||| |||||||||||||||||||| |||||||  ||||||||||||||||    
T  29922643 gcttcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaata 29922575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 38045444 - 38045399
Alignment:
Q  405 ggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  38045444 ggaggcaaaatcaattctacttgagaacattcaaacatgtcaaaat 38045399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 33608532 - 33608452
Alignment:
Q  371 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctac-ttgagaacatccaaacatgtcaaaat 450  Q
    |||||| || ||||||||||||||||||| ||||  |||||||| ||||||||| |||||| || ||||||||||||||||    
T  33608532 ctccaacttctagcttcaagttagaatcaattctcaaggcaaaaccaattctactttgagaccaaccaaacatgtcaaaat 33608452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 7667639 - 7667586
Alignment:
Q  370 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattcta 423  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||    
T  7667639 gctccaaattctagcttcaagttagaatcaattctgaaggcaaagtcaattcta 7667586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 10161851 - 10161779
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 447  Q
    ||||||||||| || |||||||||| |||| |||||||| ||||||||| | |||||||  ||||||||||||    
T  10161851 aaattgtagctgcatgttagaatcaattctagaggcaaagtcaattctattcgagaacaatcaaacatgtcaa 10161779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 13224666 - 13224753
Alignment:
Q  362 aggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||| |||||||||| |||||||||||| |||| | || | ||  ||||||||||| |||| | ||||||||||||||||||||||    
T  13224666 aggtaaaagctccaaattctagcttcaagtttgaatgaattatagaaacaaaatcaattatactcg-gaacatccaaacatgtcaaaat 13224753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 450
Target Start/End: Complemental strand, 1105492 - 1105389
Alignment:
Q  348 aaaatcaattatataggt-aaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    ||||||||||||| | || ||| ||| |||||  || |||| ||||| ||||| || || | ||||||||||||||||||||||||| ||||| ||||||    
T  1105492 aaaatcaattatagaagtcaaaagctacaaatcataacttcgagttaaaatcaattttgaaagcaaaatcaattctacttgagaacagccaaaaatgtca 1105393  T
Q  447 aaat 450  Q
    ||||    
T  1105392 aaat 1105389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 11132849 - 11132919
Alignment:
Q  378 ttgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 448  Q
    |||||||||||||||||||||| || ||  | |||||| ||||||||| |||| || ||||||||||||||    
T  11132849 ttgtagcttcaagttagaatcaattttgacgccaaaataaattctactagagagcaaccaaacatgtcaaa 11132919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 42439684 - 42439726
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattcta 423  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  42439684 tagcttcaagttagaatcaattctggaggaaaaatcaattcta 42439726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 12208901 - 12208978
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctgga-ggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| |||||||| |||||| ||| ||| | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  12208901 caaattctagcttcacgttagagtcaattccgtaaggcaaagacaattctactcgagaacatccaaacatgtcaaaat 12208978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 404
Target Start/End: Original strand, 38822275 - 38822354
Alignment:
Q  325 gttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttct 404  Q
    ||||||||||||||| ||||   |||||||||| || |||||||  ||||||||| ||| |||||| |||||||| ||||    
T  38822275 gttgaacaataaatttgaggttaaaaatcaattgtaaaggtaaaaactccaaattctagattcaagctagaatcaattct 38822354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 9952693 - 9952755
Alignment:
Q  390 gttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 452  Q
    |||||||||| |||| ||||||||||| |||||    |||||||| |||||||||||||||||    
T  9952693 gttagaatcaattctagaggcaaaatctattctgtcagagaacattcaaacatgtcaaaataa 9952755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 27374368 - 27374422
Alignment:
Q  392 tagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    |||||||| ||||  ||||||||| |||||||||||| |||| ||||||||||||    
T  27374368 tagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtca 27374422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 7668139 - 7668083
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaa 431  Q
    |||||| ||||| |||||| |||||||| ||||||||||| ||||||||||| |||||    
T  7668139 caaattctagctacaagttggaatcatt-ctggaggcaaattcaattctactcgagaa 7668083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 11134334 - 11134290
Alignment:
Q  404 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 448  Q
    |||||||| ||| ||||||||| ||||| ||||||||||||||||    
T  11134334 tggaggcataattaattctactcgagaaaatccaaacatgtcaaa 11134290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 450
Target Start/End: Complemental strand, 35439141 - 35439065
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| ||||||||| ||||||| |  ||| ||| | |||| ||||| ||||||| |||||||||||||| |||||    
T  35439141 caaattctagcttcaatttagaatgaaatctagagtcgaaataaattccacttgaggacatccaaacatgttaaaat 35439065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 420
Target Start/End: Complemental strand, 37121597 - 37121565
Alignment:
Q  388 aagttagaatcatttctggaggcaaaatcaatt 420  Q
    ||||||||||||||||||||| |||||||||||    
T  37121597 aagttagaatcatttctggagtcaaaatcaatt 37121565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 40881129 - 40881049
Alignment:
Q  370 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||    
T  40881129 gctccaagttgcagcttgaagatagaatcatttctggaggcaaaatcaattctactttagaacttgcaaacatgtcaaaat 40881049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 11038229 - 11038132
Alignment:
Q  353 caattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||  |||||||  ||||||||| |||||||||||||||||||  |||||||| |||||||| || | | ||||||||||||||||||||||||    
T  11038229 caattatggaggtaaaacctccaaattttagcttcaagttagaatcaactctggaggaaaaatcaactccattcgagaacatccaaacatgtcaaaat 11038132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 402 - 510
Target Start/End: Complemental strand, 41614842 - 41614735
Alignment:
Q  402 tctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaa 501  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||| |  ||||| |||| ||||| ||||||||  |||| || || || || |||    
T  41614842 tctggaggcaaaatcaattctacttgaaaccatccaaacaagtcaaaatca-attttatacctctagaatcaattttggctcctacacaaatggaaccaa 41614744  T
Q  502 acatacact 510  Q
    |||||||||    
T  41614743 acatacact 41614735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 5997343 - 5997418
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||| || |||||||||||||||| || | ||||||||||||||| ||||  | |||||||||||||||||||||    
T  5997343 aaattctaacttcaagttagaatcacttttagaggcaaaatcaattttactcaaaaacatccaaacatgtcaaaat 5997418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 507
Target Start/End: Complemental strand, 32056394 - 32056259
Alignment:
Q  370 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttaga 469  Q
    ||||||| || |||||| |||||||||||| || |||||| |||||||||| ||||  ||| || |||||| |||||||    | || ||||| | ||||    
T  32056394 gctccaatttctagcttaaagttagaatcaattatggaggtaaaatcaattttactatagagcaaccaaacttgtcaaa--tctgttctacacatctaga 32056297  T
Q  470 aacaattttgattcctccaaaagtgaaatcaaacatac 507  Q
    | |||||||| ||||| ||||||||||| |||||||||    
T  32056296 atcaattttggttccttcaaaagtgaaaccaaacatac 32056259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 510
Target Start/End: Complemental strand, 35495280 - 35495151
Alignment:
Q  379 tgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaatttt 478  Q
    ||||||||||||| ||||||| |||| |||||||||| ||||||| || |||  | | |||||||||||||| |  || ||||| | ||||| |||||||    
T  35495280 tgtagcttcaagt-agaatcaattctagaggcaaaattaattctaatttagagaaacaaaacatgtcaaaatca-attctacacttgtagaatcaatttt 35495183  T
Q  479 gattcctccaaaagtgaaatcaaacatacact 510  Q
    |  | ||||||||||| || ||||||||||||    
T  35495182 gggtgctccaaaagtggaaccaaacatacact 35495151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 29979506 - 29979552
Alignment:
Q  404 tggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||    
T  29979506 tggaggcaaaaccaattctacttgagaccaaccaaacatgtcaaaat 29979552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 8252827 - 8252747
Alignment:
Q  370 gctccaaattgtagcttcaag-ttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||| ||| ||||||| |  ||| || |||||||||||||||||| | |||| ||||||||||||||||    
T  8252827 gctccaaattgtagcttaaagtttagaataaactctcgaagcaaaatcaattctactt-aaaacagccaaacatgtcaaaat 8252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 13929765 - 13929842
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctgga-ggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| |||||||| |||||| ||| ||| | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  13929765 caaattctagcttcacgttagagtcaattccgtaaggcaaagacaattctactcgagaacatccaaacatgtcaaaat 13929842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 36447962 - 36448003
Alignment:
Q  407 aggcaaaatcaattctacttgagaacatccaaacatgtcaaa 448  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  36447962 aggcaaaatcaattctacccgagaacatccaaacatgtcaaa 36448003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 19006214 - 19006174
Alignment:
Q  182 tgtagcaccgacactttagattgaaggcatgtcagtgtcgg 222  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  19006214 tgtagcaccgacactttagagtgaaagcatgtcagtgtcgg 19006174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Complemental strand, 38386356 - 38386309
Alignment:
Q  402 tctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 449  Q
    ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  38386356 tctggaggcaaaatcaattttattcgagaacattcaaacatgtcaaaa 38386309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 34469301 - 34469252
Alignment:
Q  401 ttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||| || |||||| |||| |||||||||||||| ||||||||||||||    
T  34469301 ttctgaagtcaaaattaattatacttgagaacatcaaaacatgtcaaaat 34469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 450
Target Start/End: Original strand, 38524107 - 38524147
Alignment:
Q  409 gcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  38524107 gcaaaatcaattttacttgagaac-tccaaacatgtcaaaat 38524147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 39648406 - 39648475
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| |||||||||||| |||| |||  ||||||||||||  |||||  ||||||||| |||||||||    
T  39648406 tagcttaaagttagaatcagttctagagagaaaatcaattctgattgagggcatccaaacttgtcaaaat 39648475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 450
Target Start/End: Complemental strand, 25319063 - 25318997
Alignment:
Q  384 cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||| || ||||||||||||||||    
T  25319063 cttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaat 25318997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 513
Target Start/End: Original strand, 29468698 - 29468829
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa-aataattttttacacctttagaaacaattttg 479  Q
    |||||||||| |||||||| || |||| ||||||||  ||||||||||||||||||||||||||||| | |||  || ||||||| || || |||||||     
T  29468698 tagcttcaagatagaatcaattatggatgcaaaatcggttctacttgagaacatccaaacatgtcaatactaa--ttctacacctgtaaaatcaattttt 29468795  T
Q  480 attcctccaaaagtgaaatcaaacatacactaat 513  Q
     ||||||||| |||  ||| ||||||||||||||    
T  29468796 cttcctccaagagtcgaattaaacatacactaat 29468829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 2171814 - 2171738
Alignment:
Q  373 ccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 449  Q
    ||||||| |||||||||||| |||||| ||| || |||||| |||||| |||| |||||||||||||||||||||||    
T  2171814 ccaaattctagcttcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 395 - 510
Target Start/End: Complemental strand, 2635168 - 2635054
Alignment:
Q  395 aatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtg 494  Q
    ||||| ||||||||||||||||| |||||||| | | ||  ||||||||||||||| | |||| |||| | ||||| |||||||| | |||| |||||||    
T  2635168 aatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaatttt-acacttctagaatcaattttggtccctctaaaagtg 2635070  T
Q  495 aaatcaaacatacact 510  Q
    ||| ||||||||||||    
T  2635069 aaaccaaacatacact 2635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 502
Target Start/End: Complemental strand, 8330167 - 8330013
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 447  Q
    ||||||||||||| |   ||| ||||||| || ||||||||||||||||||  || |||||||| |||||||| ||||||||| || |||||||||| ||    
T  8330167 aaaatcaattatagaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacatgtaaa 8330068  T
Q  448 aa--taattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaa 502  Q
    ||  ||||| ||  ||||| ||||| ||||| ||  ||||||| |||||||| ||||    
T  8330067 aaattaattatt--cacctctagaatcaattctggctcctccagaagtgaaaccaaa 8330013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 18597065 - 18597009
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 430  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  18597065 caaattatagcttcaagttagaatcaattctggaggtaaaatcaattttacttgaga 18597009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 33560646 - 33560706
Alignment:
Q  390 gttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||| |||| |||||||||||||||||||| |||| || ||||||||||||||||    
T  33560646 gttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtcaaaat 33560706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 9082879 - 9082953
Alignment:
Q  371 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    ||||||||| ||  ||||||||||||||| ||| || |||||||||||||||| || |||||||||||||||||||    
T  9082879 ctccaaattctaagttcaagttagaatcaattcagg-ggcaaaatcaattctatttcagaacatccaaacatgtca 9082953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 2206399 - 2206473
Alignment:
Q  370 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgt 444  Q
    ||||||| || |||||||||| |||||||| || |||||| |||||||||||| ||  ||||||| |||||||||    
T  2206399 gctccaatttttagcttcaagctagaatcaattttggaggaaaaatcaattctgctctagaacattcaaacatgt 2206473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 510
Target Start/End: Original strand, 47596440 - 47596490
Alignment:
Q  460 cacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacact 510  Q
    |||||||| || |||||||||||||||||||||||||| || |||||||||    
T  47596440 cacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacact 47596490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 11271604 - 11271641
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaa 418  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11271604 tagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 26617519 - 26617443
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    |||||||||| ||||   ||| ||| || ||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  26617519 aaaatcaattttataatcaaaagctacagattctagcttcaagt-agaatcatttttggaggcaaaatcaattctact 26617443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 54705457 - 54705521
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtc 445  Q
    |||||||||||||| |||| || | ||||||||||||||| |||||| || || |||||||||||    
T  54705457 tagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtc 54705521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 471938 - 472001
Alignment:
Q  386 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaa 449  Q
    |||||||||||||| ||   |||| ||||||||||||||| || ||||| ||||||||||||||    
T  471938 tcaagttagaatcagttgcagaggtaaaatcaattctactcgacaacattcaaacatgtcaaaa 472001  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 1455633 - 1455692
Alignment:
Q  383 gcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacat 442  Q
    ||||||||||   |||| || |||||||||||||| |||||||||| |||||||||||||    
T  1455633 gcttcaagtttatatcaattttggaggcaaaatcagttctacttgaaaacatccaaacat 1455692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 32818430 - 32818480
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctact 425  Q
    |||||| ||||||||| | ||||||| |||||||||||||||||||||||||    
T  32818430 caaattctagcttcaaat-agaatcaattctggaggcaaaatcaattctact 32818480  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 52063117 - 52063156
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaatt 420  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  52063117 tagcttcaagttagaatcatttctataggcaaaatcaatt 52063156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 44845772 - 44845726
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaatt 420  Q
    |||||| | ||||||||||||||||| ||||||||| ||||||||||    
T  44845772 caaattattgcttcaagttagaatcaattctggaggaaaaatcaatt 44845726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 450
Target Start/End: Complemental strand, 51093309 - 51093208
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaa 447  Q
    |||||||||| || ||| ||| |||||||||| |||||||| |||||||||| || | |||||||||| |||| ||    ||||| || |||||||||||    
T  51093309 aaaatcaattgtagaggcaaaagctccaaattctagcttca-gttagaatcaattatagaggcaaaataaattttatgcaagaacgtcaaaacatgtcaa 51093211  T
Q  448 aat 450  Q
    |||    
T  51093210 aat 51093208  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 22250217 - 22250180
Alignment:
Q  409 gcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  22250217 gcaaaatcaattctaattgagaacaaccaaacatgtca 22250180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 22683882 - 22683813
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||| ||| | |||||||||||||||||||| ||||  | ||||  | |||||||||||||    
T  22683882 tagcttcaagttataattaattctggaggcaaaatcaattttactcaaaaacaaaccaacatgtcaaaat 22683813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 510
Target Start/End: Original strand, 50375572 - 50375644
Alignment:
Q  435 ccaaacatgtcaaaataattttttacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacact 510  Q
    |||||||||||||||||   || ||||||| || || ||||||||| || |||||||||  |||||||||||||||    
T  50375572 ccaaacatgtcaaaata---ttatacacctctaaaatcaattttgactcatccaaaagtagaatcaaacatacact 50375644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 4451469 - 4451413
Alignment:
Q  387 caagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatg 443  Q
    ||||||||||| ||||| |||| ||||| ||| |||||| ||||| |||||||||||    
T  4451469 caagttagaattatttccggagtcaaaagcaagtctactcgagaatatccaaacatg 4451413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 450
Target Start/End: Complemental strand, 9134635 - 9134560
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||| ||||||||||| || |||| ||||||| | ||||||||||| ||| || |||| | ||||||||||||||    
T  9134635 caaattttagcttcaagt-aggatcaattctggaagtaaaatcaattccactcgataacaactaaacatgtcaaaat 9134560  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 26617233 - 26617193
Alignment:
Q  375 aaattgtagcttcaagttagaatcatttctggaggcaaaat 415  Q
    ||||||||| ||||||||||||||| || ||||||||||||    
T  26617233 aaattgtagtttcaagttagaatcaattttggaggcaaaat 26617193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 35995246 - 35995178
Alignment:
Q  382 agcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||||||||||||||||| ||||| ||| |||||||||| |||| || | |||||  | ||||||||||    
T  35995246 agcttcaagttagaatcagttctgaaggtaaaatcaattatactagaaatcatcctcatatgtcaaaat 35995178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 49138851 - 49138891
Alignment:
Q  404 tggaggcaaaatcaattctacttgagaacatccaaacatgt 444  Q
    ||||||||||||||||| ||||||| |||| ||||||||||    
T  49138851 tggaggcaaaatcaattttacttgaaaacaaccaaacatgt 49138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 48635225 - 48635322
Alignment:
Q  348 aaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    ||||||||||||| ||  ||| ||| |||||| |||  | |||||||||||| || || |||||||| |||||||||||||||||||||||||||||||    
T  48635225 aaaatcaattatagagacaaaagcttcaaattctaggctgaagttagaatcaattatg-aggcaaaaccaattctacttgagaacatccaaacatgtca 48635322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 32088640 - 32088708
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||||||| || || ||| |||||||||||||||||||| || ||||||||||||||||    
T  32088640 tagcttcaagttagaatcaattttgtagg-aaaatcaattctacttgagagcaaccaaacatgtcaaaat 32088708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 51158469 - 51158551
Alignment:
Q  370 gctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 452  Q
    |||||||||| |  |||||||||| ||| | | |||||||||||||||||||||   ||||||||||||||||| ||||||||    
T  51158469 gctccaaattctttcttcaagttaaaataaatcctggaggcaaaatcaattctatccgagaacatccaaacatgccaaaataa 51158551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 508
Target Start/End: Complemental strand, 6021822 - 6021695
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat-aatt-ttttacacctttagaaacaatttt 478  Q
    ||||||||||| ||||||  |||| ||||||||||||||||||||||| | ||  ||||| ||||||||| |||| || ||||||| ||||| ||| |||    
T  6021822 tagcttcaagt-agaatcgattctagaggcaaaatcaattctacttgaaatcaatcaaacttgtcaaaatcaattattctacacctctagaatcaa-ttt 6021725  T
Q  479 gattcctccaaaagtgaaatcaaacataca 508  Q
     | ||||||||||||| || ||||||||||    
T  6021724 aactcctccaaaagtggaaccaaacataca 6021695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 450
Target Start/End: Complemental strand, 15452510 - 15452436
Alignment:
Q  376 aattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    |||| ||| ||||| |||||| || |||| ||  |||||||||||||||| ||||||||||||| ||||||||||    
T  15452510 aattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaat 15452436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 505
Target Start/End: Complemental strand, 41517016 - 41516883
Alignment:
Q  371 ctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaa 470  Q
    ||||||||| || |||||||||||||||| || |  | ||||||||||||||||| || ||||| | || |||||| ||| |  || ||||||| |||||    
T  41517016 ctccaaattctaacttcaagttagaatcaattttaaacgcaaaatcaattctactcgaaaacattccaagatgtcataatca-attctacacctctagaa 41516918  T
Q  471 acaattttgattcctccaaaagtgaaatcaaacat 505  Q
       ||||||| ||||||||||||| || |||||||    
T  41516917 tggattttgactcctccaaaagtggaaccaaacat 41516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 446
Target Start/End: Complemental strand, 646185 - 646134
Alignment:
Q  395 aatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtca 446  Q
    ||||| |||||||||||||||||||||||||  | |||| ||||||||||||    
T  646185 aatcaattctggaggcaaaatcaattctactcaaaaacaaccaaacatgtca 646134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 18325187 - 18325226
Alignment:
Q  411 aaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  18325187 aaaatcaattctactcgagaaaatccaaacatgtcaaaat 18325226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Original strand, 20721057 - 20721108
Alignment:
Q  458 tacacctttagaaacaattttgattcctccaaaagtgaaatcaaacatacac 509  Q
    ||||||| ||||| ||||||||||||||||||||||| ||  ||||||||||    
T  20721057 tacacctctagaatcaattttgattcctccaaaagtggaacaaaacatacac 20721108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 448
Target Start/End: Original strand, 404121 - 404187
Alignment:
Q  382 agcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaa 448  Q
    |||||||||||| ||||| |||| |||| ||||||||||| |||  | |||||| ||||||||||||    
T  404121 agcttcaagttaaaatcaattcttgaggtaaaatcaattcaactaaaaaacatctaaacatgtcaaa 404187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 5268244 - 5268194
Alignment:
Q  374 caaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctac 424  Q
    |||||| ||||||| ||||||||||| || |||||||||||| ||||||||    
T  5268244 caaattctagcttcgagttagaatcaattttggaggcaaaattaattctac 5268194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 5407819 - 5407777
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattcta 423  Q
    ||||||||||||||||| || |||| |||||||||||||||||    
T  5407819 tagcttcaagttagaattatctctgcaggcaaaatcaattcta 5407777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 431
Target Start/End: Original strand, 52013545 - 52013594
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaa 431  Q
    ||||||||||||||||||| || ||||||||||||||||| |||| |||||    
T  52013545 tagcttcaagttagaatcaatt-tggaggcaaaatcaattttactggagaa 52013594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 446
Target Start/End: Original strand, 20026168 - 20026296
Alignment:
Q  318 aaagtgagttgaacaataaattagaggcggaaaatcaattatataggtaaatgctccaaattgtagcttcaagttagaatcatttctggagg-caaaatc 416  Q
    ||||||| |||||||||||||| |||     ||||||||| || || |||| |||  || || ||||||||||| ||||||| || |||| | |||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaatttctagcttcaagt-agaatcaattgtggaagtcaaaatc 20026266  T
Q  417 aattctacttgagaacatccaaacatgtca 446  Q
    |||| || ||||||||| ||||||||||||    
T  20026267 aattataattgagaacaaccaaacatgtca 20026296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 450
Target Start/End: Complemental strand, 12655278 - 12655194
Alignment:
Q  366 aaatgctccaaattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 450  Q
    ||||||| |||||| ||||||||||||||||| | |||| |||||||| || | ||||||  | | || | ||||||||||||||    
T  12655278 aaatgctacaaattctagcttcaagttagaattaattctagaggcaaagtcgaatctactccaaagcaactaaacatgtcaaaat 12655194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 509
Target Start/End: Complemental strand, 31844 - 31718
Alignment:
Q  381 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttga 480  Q
    ||||||||||| | ||||| || |||||||| |||||||| |||| || |||| |||||||||||| ||| |  || ||||||| ||||| ||||||||     
T  31844 tagcttcaagt-ataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatca-attctacacctctagaatcaattttgg 31747  T
Q  481 ttcctccaaaagtgaaatcaaacatacac 509  Q
    |  ||| | ||||| || |||||||||||    
T  31746 tcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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