View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_low_13 (Length: 579)

Name: NF11813_low_13
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_low_13
NF11813_low_13
[»] chr7 (4 HSPs)
chr7 (1-316)||(33007785-33008099)
chr7 (315-564)||(33006976-33007225)
chr7 (80-158)||(33008291-33008369)
chr7 (145-204)||(23117360-23117419)
[»] chr6 (3 HSPs)
chr6 (145-208)||(2732937-2733000)
chr6 (145-205)||(33735435-33735495)
chr6 (145-205)||(33996338-33996398)
[»] chr3 (4 HSPs)
chr3 (145-211)||(15802574-15802640)
chr3 (111-208)||(50402650-50402749)
chr3 (145-204)||(43381177-43381236)
chr3 (151-211)||(21754245-21754305)
[»] chr8 (4 HSPs)
chr8 (145-205)||(45371098-45371158)
chr8 (145-206)||(43935148-43935209)
chr8 (145-205)||(27483052-27483112)
chr8 (145-205)||(44806259-44806319)
[»] chr1 (2 HSPs)
chr1 (145-204)||(6025971-6026030)
chr1 (110-204)||(46937536-46937630)
[»] chr5 (8 HSPs)
chr5 (150-208)||(16973829-16973887)
chr5 (131-201)||(43283418-43283488)
chr5 (111-204)||(3147140-3147233)
chr5 (145-205)||(7430119-7430179)
chr5 (111-167)||(17734032-17734088)
chr5 (147-207)||(37056370-37056430)
chr5 (145-205)||(41015003-41015063)
chr5 (145-205)||(41257322-41257381)
[»] chr2 (3 HSPs)
chr2 (145-207)||(4204949-4205010)
chr2 (114-163)||(24742989-24743038)
chr2 (145-206)||(39322398-39322459)
[»] chr4 (2 HSPs)
chr4 (156-205)||(34581591-34581640)
chr4 (145-205)||(4762551-4762611)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 33008099 - 33007785
Alignment:
Q  1 accggtattattccgtgataagctatttagcacaaagtgttaccaaatagtggcgctatagcacaatagcgaaccctaaaccagaaaccgggaattgtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33008099 accggtattattccgtgataagctatttagcacaaagtgttaccaaatagtggcgctatagcacagtagcgaaccctaaaccagaaaccgggaattgtag 33008000  T
Q  101 ggataataatcagtgttgtcaaatagcggttatagcttagcgttatttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33007999 ggataataatcagtgttgtcaaatagcggttatagcttagcgttatttgaacaaaccgctattattccgcgataagct-attagcacaaaatgttgtcaa 33007901  T
Q  201 atagcagcgcttagtagcatagcggaatttgagcagaccgctattatccgcgacctccaattgacaccattgataataaaaggttcatgagagaacaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007900 atagcagcgcttagtagcatagcggaatttgagcagaccgctattatccgcgacctccaattgacaccattgataataaaaggttcatgagagaacaaga 33007801  T
Q  301 ggaagatccaaccctc 316  Q
    ||||||||||||||||    
T  33007800 ggaagatccaaccctc 33007785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 315 - 564
Target Start/End: Complemental strand, 33007225 - 33006976
Alignment:
Q  315 tccaatatcataaattattatcaaaatgtctacttctcactatcgtgtgtgtacatacatgatgaacacaaatgaattggaacaaggaatgtaaatatgt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33007225 tccaatatcataaattattatcaaaatgtctacttctcactatcgtgtgtgttcatacatgatgaacacaaatgaattggaacaaggaatgtaaatatgt 33007126  T
Q  415 gaatgataccttccagcagagcgagggcgaacagaggaagcaccgtaatgagacaagaggcgagaaagggtatcatgaggaatagcgtctggaaggtgtt 514  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007125 gaatgataccttccagcagagcaagggcgaacagaggaagcaccgtaatgagacaagaggcgagaaagggtatcatgaggaatagcgtctggaaggtgtt 33007026  T
Q  515 tgattaaaagcgtagccggtgattccacagtgcaaggatttggttctgtg 564  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33007025 tgattaaaagcgtagccggggattccacagtgcaaggatttggttctgtg 33006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 33008369 - 33008291
Alignment:
Q  80 accagaaaccgggaattgtagggataataatcagtgttgtcaaatagcggttatagcttagcgttatttgaacaaaccg 158  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | |||| | ||||  ||||||| |||||||    
T  33008369 accagaaaccgggaattgtagggataataatcggtgttgtcaaatagcagctataacatagctgtatttgagcaaaccg 33008291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 23117419 - 23117360
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatag 204  Q
    ||||||||||| ||||||| ||||  |||| ||| |||||||||||||||||| ||||||    
T  23117419 atttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaatag 23117360  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 2732937 - 2733000
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcagc 208  Q
    ||||||||||| ||||||| ||  |||||| ||| ||||| |||||||||||||||||||||||    
T  2732937 atttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagc 2733000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 33735495 - 33735435
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    |||| |||||||| || || ||||| |||| ||| ||||| ||||||||||||||||||||    
T  33735495 attttaacaaaccacttttgttccgtgatatgctatttagtacaaaatgttgtcaaatagc 33735435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 33996398 - 33996338
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    ||||||||||||||||||| |||||| ||  ||| ||||  ||||||||||||| ||||||    
T  33996398 atttgaacaaaccgctattgttccgcaatccgctttttactacaaaatgttgtctaatagc 33996338  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 15802574 - 15802640
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcagcgct 211  Q
    ||||||||||| ||||||| |||||||||| | | | ||| ||||| ||||||||||||||||||||    
T  15802574 atttgaacaaatcgctattcttccgcgatatgttatatagtacaaagtgttgtcaaatagcagcgct 15802640  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 50402749 - 50402650
Alignment:
Q  111 cagtgttgtcaaatagcggttata--gcttagcgttatttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcagc 208  Q
    ||||||||||||||||||| ||||  || |||| | || |||||||| | ||||| |||||| ||| ||| ||||| | ||| |||||||||||||||||    
T  50402749 cagtgttgtcaaatagcggctatacagcatagcatgatctgaacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatagcagc 50402650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 43381177 - 43381236
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatag 204  Q
    ||||||| ||| |||||||||||||||||| ||  ||||  |||||||||||||||||||    
T  43381177 atttgaataaatcgctattattccgcgatatgcaatttaatacaaaatgttgtcaaatag 43381236  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 21754245 - 21754305
Alignment:
Q  151 acaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcagcgct 211  Q
    ||||| ||||||| ||||||||||  || ||||| ||||| |||||||||||||| |||||    
T  21754245 acaaatcgctattgttccgcgatacactatttagtacaaattgttgtcaaatagcggcgct 21754305  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 45371158 - 45371098
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    ||||| ||||||| ||||| |||||| ||| ||| ||||| ||||||||||||||||||||    
T  45371158 atttggacaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaatagc 45371098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 43935209 - 43935148
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagca 206  Q
    |||||||||||   ||||| ||||| |||| ||||||||||||||||| |||| ||||||||    
T  43935209 atttgaacaaatgactattgttccgtgatacgctgtttagcacaaaatattgtgaaatagca 43935148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 27483052 - 27483112
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    ||||||||||||||||||||||| | |||| ||| |  || ||||||| ||||||||||||    
T  27483052 atttgaacaaaccgctattattctgagatacgctatccagtacaaaatattgtcaaatagc 27483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 44806259 - 44806319
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    |||||||||||| |||| |||| | ||||| ||| ||||| ||||| ||||||||||||||    
T  44806259 atttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 44806319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 6026030 - 6025971
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatag 204  Q
    |||||||||||  | |||| |||||||||| ||| ||||| |||||||||||||||||||    
T  6026030 atttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatag 6025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 46937536 - 46937630
Alignment:
Q  110 tcagtgttgtcaaatagcggttatagcttagcgttatttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatag 204  Q
    ||||| |||| ||||| ||| ||| ||||||||  |||||||||||  |||||| |||||||||  ||| ||||| ||||||| |||| ||||||    
T  46937536 tcagttttgttaaataacggctattgcttagcggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatag 46937630  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 16973887 - 16973829
Alignment:
Q  150 aacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcagc 208  Q
    |||||| | ||||| |||||||||| | ||||||| ||||||| |||||||||||||||    
T  16973887 aacaaatcactattgttccgcgatacgttgtttagtacaaaattttgtcaaatagcagc 16973829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 43283488 - 43283418
Alignment:
Q  131 tatagcttagcgttatttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaa 201  Q
    |||||| |||||| ||||||||||| |||| || |||||| ||| ||| ||| | ||||||||||||||||    
T  43283488 tatagcatagcgtaatttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgtcaaa 43283418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 3147233 - 3147140
Alignment:
Q  111 cagtgttgtcaaatagcggttatagcttagcgttatttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatag 204  Q
    ||||||||||||||||||| |||||| ||| |  ||||||| |||||||||| ||| || ||||  || |||||||| ||   |||||||||||    
T  3147233 cagtgttgtcaaatagcggctatagcgtagtggaatttgaagaaaccgctatcattgcgtgatacactatttagcactaagaattgtcaaatag 3147140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 7430119 - 7430179
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    ||||| ||||||||||||| |||| | ||| ||| ||||| |||| |||||||||||||||    
T  7430119 atttggacaaaccgctattgttccacaatacgctatttagtacaagatgttgtcaaatagc 7430179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 17734032 - 17734088
Alignment:
Q  111 cagtgttgtcaaatagcggttatagcttagcgttatttgaacaaaccgctattattc 167  Q
    ||||||||||||||||||| |||||| ||||   ||||| ||||| |||||||||||    
T  17734032 cagtgttgtcaaatagcggctatagcatagcagaatttgcacaaatcgctattattc 17734088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 37056370 - 37056430
Alignment:
Q  147 ttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcag 207  Q
    |||||||||  |||||| ||||| | || ||||||||| || |||||||||||||||||||    
T  37056370 ttgaacaaattgctattgttccgtggtacgctgtttagtacgaaatgttgtcaaatagcag 37056430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 41015063 - 41015003
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    |||||||||||| |||||| ||||| |||| ||| ||||| ||||| |||||||| |||||    
T  41015063 atttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtcatatagc 41015003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 41257322 - 41257381
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    |||| |||||||||||||||||||| |||| | ||||||| | ||| ||||||||||||||    
T  41257322 attttaacaaaccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagc 41257381  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 4205010 - 4204949
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagcag 207  Q
    ||||||| ||||||||||| ||||| |||| ||| ||||| | ||||||||||||||||||||    
T  4205010 atttgaaaaaaccgctattgttccgtgatatgctatttagta-aaaatgttgtcaaatagcag 4204949  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 24742989 - 24743038
Alignment:
Q  114 tgttgtcaaatagcggttatagcttagcgttatttgaacaaaccgctatt 163  Q
    |||||||||||||||||| |||| |||||  ||||||||||||| |||||    
T  24742989 tgttgtcaaatagcggttctagcgtagcggaatttgaacaaaccactatt 24743038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 39322459 - 39322398
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagca 206  Q
    |||||||||||| |||||| ||| |||||||| ||||||| ||| | ||||||||| |||||    
T  39322459 atttgaacaaactgctatttttctgcgataagttgtttagtacagagtgttgtcaagtagca 39322398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 34581591 - 34581640
Alignment:
Q  156 ccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    |||||||| ||||| |||| ||| ||||| ||||||||||||||||||||    
T  34581591 ccgctattgttccgtgatacgctatttagtacaaaatgttgtcaaatagc 34581640  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 4762611 - 4762551
Alignment:
Q  145 atttgaacaaaccgctattattccgcgataagctgtttagcacaaaatgttgtcaaatagc 205  Q
    ||||| |||||||| ||||  ||||| ||| ||| ||||| ||||||||||||||||||||    
T  4762611 atttggacaaaccgttattgctccgcaatacgctatttagtacaaaatgttgtcaaatagc 4762551  T

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