View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_14 (Length: 566)
Name: NF11813_low_14
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_14 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 42957110 - 42956742
Alignment:
| Q |
17 |
attgtcattctctcaacaaccattagcagcaatggtttttggagcatatggaaaagtcggaacgtcaaaccgtgggagggtatcgacacctctctagcaa |
116 |
Q |
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| T |
42957110 |
attgtcattctctcaacaaccattagcagcaatggtttttggagcatatggaaaagtcggaacgtcaaactgtgggagggtatcgacacctctctagcaa |
42957011 |
T |
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| Q |
117 |
tgaataccacgtgggaaaggatgctttaaatgaatagagttgtatgcaaagaacaaaacttccaattcgcggtacatctcagtcttgtggatggacccaa |
216 |
Q |
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| T |
42957010 |
tgaatgccacgtgagaaaggatgctttaaatgaatagagttgtatgcaaagaacaaaacttccaattcgcggtacatct--gtcttgtggatggacccaa |
42956913 |
T |
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| Q |
217 |
ccctgacacagtagttaaatataatgttgattgtgccttgtttaacaacaattcaatcatgggttatgatatgtgcttcagagactctaggagtctattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
42956912 |
ccctgacacagtagttaaatataatgttgattgtgccttgtttaacaacaattcaatcatgggttatgatatgtgctttagagactctatgagtctattc |
42956813 |
T |
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| Q |
317 |
ttatttgggaaataaagctggatgcattaccgagttaccatcacggaagctgaactattggtctccttgaa |
387 |
Q |
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| T |
42956812 |
ttatttgggaaataaagctggatgcattaccgagttaccatcacggaagctgaactattggtctccttgaa |
42956742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 427 - 560
Target Start/End: Complemental strand, 42956746 - 42956613
Alignment:
| Q |
427 |
ttgaaactaattgcaagcttgtggcagatgccctctctgcccgatatgccacatagcgaattaggggacattatgtcccaatgtaaacgtcacttgatta |
526 |
Q |
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| T |
42956746 |
ttgaaactaattgcaagcttgtggcagatgccctctctgcccgatatgccacatagcgaattaggggacattatgtcccaatgtaaacgtcacttgatta |
42956647 |
T |
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| Q |
527 |
ataatcgaaattatgtggtgccatttcatctcac |
560 |
Q |
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| T |
42956646 |
ataatcgaaattatgtggtgccatttcatttcac |
42956613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 231 - 405
Target Start/End: Original strand, 7386026 - 7386201
Alignment:
| Q |
231 |
ttaaatataatgttgattgtgccttgtttaacaacaattcaatcatgggttatgatatgtgcttcagagactctaggagtctattcttatttgggaaata |
330 |
Q |
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| T |
7386026 |
ttaaatgtaatgttgatcgtgccttgtttaacaacaattcactcatgggttatggtatgtgttttagagactcaatgggtcaatttttatttgggaaatc |
7386125 |
T |
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| Q |
331 |
aagctggatgcattaccgagttaccatcacggaagctgaa-ctattggtctccttgaagccattaaagtagctata |
405 |
Q |
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| T |
7386126 |
aaattggttgcattatagagttaccactatggaagctgaagctattggactcctagaggccatcaaaacagctata |
7386201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 49508224 - 49508297
Alignment:
| Q |
230 |
gttaaatataatgttgattgtgccttgtttaacaacaattcaatcatgggttatgatatgtgcttcagagactc |
303 |
Q |
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| T |
49508224 |
gttaaatgtaatgttgactgcgcgttgtttaacaataactctatcatgggctatggtttatgcttcagagactc |
49508297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 5173177 - 5173274
Alignment:
| Q |
232 |
taaatataatgttgattgtgccttgtttaacaacaattcaatcatgggttatgatatgtgcttcagagactctaggagtctattcttatttgggaaat |
329 |
Q |
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| T |
5173177 |
taaatgtaatgttgactgtgccttgtttaacaacaattcattcatgggttatggtatatgttttagagattcaatgggtcaatttttatttgggaaat |
5173274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 237088 - 237015
Alignment:
| Q |
230 |
gttaaatataatgttgattgtgccttgtttaacaacaattcaatcatgggttatgatatgtgcttcagagactc |
303 |
Q |
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| T |
237088 |
gttaaatgtaatgttgactgcgcgttgtttaacaataactctatcatgggctatggtttatgcttcagagactc |
237015 |
T |
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