View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11813_low_15 (Length: 548)
Name: NF11813_low_15
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_15 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 542
Target Start/End: Complemental strand, 43565051 - 43564531
Alignment:
| Q |
22 |
tgttcctttgttccatgatgttcctgagaatgtttctttcagttcattctcttctatttgcaaaccctctgattcaaatgccccaccttcactccttcaa |
121 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||| |||||||| ||||||||| |||||||| |
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| T |
43565051 |
tgtttctttgttccatgatgttcctgagaatgtttctttcggttctttctctgaaatatgcaaaccctctgaatcaaatgctccaccttcaatccttcaa |
43564952 |
T |
|
| Q |
122 |
aaagttattgctttttctcaaaaaggtggtttctttggattctccaatgaaaccccttctgatagattgatgaattcattgggtagtttcaatggaaaag |
221 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
43564951 |
aaagttcttgatttttctcacaaaggtggtttctttggattctctcatgaaaccccgtctgatagattgatgaattcattaggtagtttcaatggaaaag |
43564852 |
T |
|
| Q |
222 |
actttgtgagtattttcaggttcaaaacatggtggtctactcaatgggttggtaaatctggttctgatttacaaatggaaactcaatggattctttttga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43564851 |
actttgtgagtattttcaggttcaaaacgtggtggtccactcaatgggtaggaaaatctggttctgatttacaaatggaaactcaatggattctcattga |
43564752 |
T |
|
| Q |
322 |
tattcctgaaatcaaatcctatgctgtgatcattcctataattgaaaaaggttttaggtctgcactttttccaggttctgatgatcatgtcatgatttgt |
421 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||| ||||||||| |
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| T |
43564751 |
tattcctgaaatcaaatcctatgttgttgtcattcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgt |
43564652 |
T |
|
| Q |
422 |
gctgaaagtggttcaacaaaggtgaaagaatcatgtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaggcttata |
521 |
Q |
| |
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||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43564651 |
gctgaaagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttata |
43564552 |
T |
|
| Q |
522 |
gtgttataagggttcatctca |
542 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
43564551 |
gtgttataagggttcatctca |
43564531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 36433008 - 36432486
Alignment:
| Q |
20 |
ggtgttcctttgttccatgatgttcctgagaatgtttctttcagttcattctcttctatttgcaaaccctctgattcaaatgccccaccttcactccttc |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| || |
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| T |
36433008 |
ggtgttcctttgtttcatgatgttcctgagaatgtttctttcagttcattctcttctatatgtaaaccctctgagtcaaatgcaccaccttcactcgttg |
36432909 |
T |
|
| Q |
120 |
aaaaagttattgctttttctcaaaaaggtggtttctttggattctccaatgaaaccccttctgatagattgatgaattcattgggtagtttcaatggaaa |
219 |
Q |
| |
|
| ||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | |
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|
| T |
36432908 |
accgtgttctttctttttctcacaaaggtggtttctttggattctccaatgaaaccccatctgatagattcatgaattcattaggtagtttcaatggtag |
36432809 |
T |
|
| Q |
220 |
agactttgtgagtattttcaggttcaaaacatggtggtctactcaatgggttggtaaatctggttctgatttacaaatggaaactcaatggattcttttt |
319 |
Q |
| |
|
| ||||||| |||||||| ||||||||||| |||||||||||||||||| | || | ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
36432808 |
aaactttgtcagtatttttaggttcaaaacttggtggtctactcaatggataggaagatctggttctgatttgcaaatggaaactcaatggattcttttt |
36432709 |
T |
|
| Q |
320 |
gatattcctgaaatcaaatcctatgctgtgatcattcctataattgaaaaaggttttaggtctgcactttttccaggttctgatgatcatgtcatgattt |
419 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| | ||||||| |
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|
| T |
36432708 |
gagattcctgaaatcagatcctatgctgtgatcattcctatcattgaaaacggttttaggtctgcacttcatcctggttctgatgaccattttatgattt |
36432609 |
T |
|
| Q |
420 |
gtgctgaaagtggttcaacaaaggtgaaagaatcatgtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaggctta |
519 |
Q |
| |
|
||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36432608 |
gtgctgagagtggttcaacaaaggtgaaagcattgagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagctta |
36432509 |
T |
|
| Q |
520 |
tagtgttataagggttcatctca |
542 |
Q |
| |
|
||||| | | ||||||||||||| |
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|
| T |
36432508 |
tagtgctttgagggttcatctca |
36432486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 43973547 - 43974071
Alignment:
| Q |
18 |
aaggtgttcctttgttccatgatgttcctgagaatgtttctttcagttcattctcttctatttgcaaaccctctgattcaaatgccccaccttcactcct |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||||||||| ||||| |||||| |||| |||||| ||||||| |||||||| ||||||||||| | |
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|
| T |
43973547 |
aaggcgttcctttgttccatgatgttcctaacaatgtttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgt |
43973646 |
T |
|
| Q |
118 |
tcaaaaagttattgctttttctcaaaaaggtggtttctttggattctccaatgaaaccccttctgatagattgatgaattcattgggtagtttcaatgga |
217 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||| ||||| |
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| T |
43973647 |
tcaacgtgttcatgctttttctcacaaaggtggtttctttggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttcatgga |
43973746 |
T |
|
| Q |
218 |
aaagactttgtgagtattttcaggttcaaaacatggtggtctactcaatgggttggtaaatctggttctgatttacaaatggaaactcaatggattcttt |
317 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||| |||||||||| ||||||| | || || ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
43973747 |
aaagactttgtcagtgtttttaggttcaaaacttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctca |
43973846 |
T |
|
| Q |
318 |
ttgatattcctgaaatcaaatcctatgctgtgatcattcctataattgaaaaaggttttaggtctgcactttttccaggttctgatgatcatgtcatgat |
417 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| | ||||||||| ||||||||||||| ||| ||| ||||||||||| ||||||||||| |
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| T |
43973847 |
ttgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgat |
43973946 |
T |
|
| Q |
418 |
ttgtgctgaaagtggttcaacaaaggtgaaagaatcatgtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaggct |
517 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| ||| ||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| || ||| |
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|
| T |
43973947 |
ttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagct |
43974046 |
T |
|
| Q |
518 |
tatagtgttataagggttcatctca |
542 |
Q |
| |
|
||||||| ||| ||||||||||||| |
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|
| T |
43974047 |
tatagtgctattagggttcatctca |
43974071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 8952106 - 8952456
Alignment:
| Q |
18 |
aaggtgttcctttgttccatgatgttcctgagaatgtttctttcagttcattctcttctatttgcaaaccctctgattcaaatgccccaccttcactcct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| |||| ||||| ||||| |||| |||||| ||||||| |||||||| ||||||||||| | |
|
|
| T |
8952106 |
aaggtgttcctttgttccatgatgttcctaacagtgttccttttagttctgtctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgt |
8952205 |
T |
|
| Q |
118 |
tcaaaaagttattgctttttctcaaaaaggtggtttctttggattctccaatgaaaccccttctgatagattgatgaattcattgggtagtttcaatgga |
217 |
Q |
| |
|
|||| | ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||| |||||| |
|
|
| T |
8952206 |
tcaacatgttcatgctttttctcgcaaaggtggtttctttggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttaatgga |
8952305 |
T |
|
| Q |
218 |
aaagactttgtgagtattttcaggttcaaaacatggtggtctactcaatgggttggtaaatctggttctgatttacaaatggaaactcaatggattcttt |
317 |
Q |
| |
|
||| ||||||| ||| |||| ||| ||||||| |||||||||| ||||||| | || || ||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
8952306 |
aaa-actttgttagtgtttttaggctcaaaacttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaaatcaatggattctca |
8952404 |
T |
|
| Q |
318 |
ttgatattcctgaaatcaaatcctatgctgtgatcattcctataattgaaaa |
369 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| | |||||| |
|
|
| T |
8952405 |
ttgatattcctgaaatcaaatcctatgttgttgtcattcctatcaatgaaaa |
8952456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 8952460 - 8952492
Alignment:
| Q |
407 |
catgtcatgatttgtgctgaaagtggttcaaca |
439 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
8952460 |
catgtcatgatttgtgctgaaagtagttcaaca |
8952492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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