View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_17 (Length: 487)
Name: NF11813_low_17
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 23931828 - 23931486
Alignment:
| Q |
1 |
acttcaggtacaaatgatagcagaacaggaagtactgtatggatcaagaagcccttcaaaggcccagagcgcaagaaaagcacctaggacaccaaatggt |
100 |
Q |
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| T |
23931828 |
acttcaggtacaaatgatagcagagcaggaagtactgtatgggtcgaaaagcccttcaaaggcccagagtgcaagaaaagcgcctaggacaccaaatgga |
23931729 |
T |
|
| Q |
101 |
agtgcagctaatagaagaggtacctttggaggatcagttctaaaacctgattcaaaagctactcaatctagctcaacaaggaagactgacaaagtaaacc |
200 |
Q |
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| T |
23931728 |
agtgcggctaatagaagaggtacctttggaggatcagtgctaaaacctgattcaaaagctactcaatcaagctccacaaggaagactgacaaagtaaacc |
23931629 |
T |
|
| Q |
201 |
aaatcgagcaaacaaataacctagacgatgccatttcatgtttctcatcaggtagctttctttatactttactccctttttgtttttctgtttgtttgca |
300 |
Q |
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| T |
23931628 |
aaattgagcaaacaaataacctagacgatgccatttcatgtttctcatcaggtagctttttatatgctttgctccctttttgttttgcttttcatttgca |
23931529 |
T |
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| Q |
301 |
tctccggcttgcagatttctcacctggtaagggtttaacagtt |
343 |
Q |
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| T |
23931528 |
tctccggctcgcagatttttcacttggtaagggtttaacagtt |
23931486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 366 - 431
Target Start/End: Complemental strand, 23931403 - 23931338
Alignment:
| Q |
366 |
tggtaggttatccaagcgcagatcctgctaagaaaaatgtaaatgtatttttcttgtctccaccaa |
431 |
Q |
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| T |
23931403 |
tggtaggttatctaagcacagatcctgctaagaaaaatgtaaatgtatttttcttgtctccaccaa |
23931338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 34237800 - 34237845
Alignment:
| Q |
2 |
cttcaggtacaaatgatagcagaacaggaagtactgtatggatcaa |
47 |
Q |
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||||||| ||||||||||||||||||||| | ||| |||||||||| |
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| T |
34237800 |
cttcagggacaaatgatagcagaacaggaggcactatatggatcaa |
34237845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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