View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_18 (Length: 466)
Name: NF11813_low_18
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 187 - 458
Target Start/End: Complemental strand, 30103934 - 30103663
Alignment:
| Q |
187 |
cattagtgtgaaccgtatattctgtaaataaagaaagnnnnnnnnncttaatgtattcaatctttattatcaaattaaatacattcattttagttgattg |
286 |
Q |
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| T |
30103934 |
cattagtgtgaaccgtatattttgtaaataaagagagagaaaaaaacttaatatattcaatctttattatcaaattaaatacattgattttagttgattg |
30103835 |
T |
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| Q |
287 |
atccatgttagtggagatgatagaattgatcttgaaggttaatggatccaagtcaaacataaactgtatcctgaaaatgaaaagtaatttacattgattt |
386 |
Q |
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| T |
30103834 |
atccatgttagtggagatgatagaattgatcttcaaggttaatggatccaagtcaaacataaactgtatcctaaaaatgaaaagtaatttacattgattt |
30103735 |
T |
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| Q |
387 |
tctttgatcaaatatttgttagtgcttgtcttgtctgtctgtctcggtggttgagcttaaacagacctatgc |
458 |
Q |
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| T |
30103734 |
tctttgatcaaatatttgttagtgcttgtcttgtctttctgtctcggtggctgagcttaaacagacctatgc |
30103663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 30104095 - 30103993
Alignment:
| Q |
18 |
aaggttcaaatataaaccctgcatttagaatgtaatgttcctaccaattgaactaagatcacggagacttacatattttctttagaagtagaagaaaata |
117 |
Q |
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|||||||| ||||||||| |||||||| |||||||| || ||| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
30104095 |
aaggttcatatataaaccatgcatttaaaatgtaatatttctaacaattgaattaagatcacggagatttacatattttctttaaaagtagaagaaaata |
30103996 |
T |
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| Q |
118 |
cta |
120 |
Q |
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||| |
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| T |
30103995 |
cta |
30103993 |
T |
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