View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_24 (Length: 403)
Name: NF11813_low_24
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 46 - 390
Target Start/End: Original strand, 16826759 - 16827088
Alignment:
| Q |
46 |
ggtcttcactcaattaattatgtcatgtcaactttagaaccttgcaaagtgcatggtccccattatcttggggtaaaagaactggttgtttgaattttag |
145 |
Q |
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| T |
16826759 |
ggtctccacttaattaattatgtcatgtcaactttagaaccttgcaaagtgcatggtccccattatcttggg----------------tatgagttttag |
16826842 |
T |
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| Q |
146 |
tattccatagatatggttttattgttaatcaacctatatatctatttctggaaggttcaaagagcataatttatagta-gctttggtaaaagaagttcat |
244 |
Q |
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| T |
16826843 |
tattccatagatatggttttattgttaattaatctatatatctatttctggaaggttcaaagagcataatatatagtaagctttggtaaaagaagttcat |
16826942 |
T |
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| Q |
245 |
gagaaccacgtgtgtggttgtagttttgatgatccattataaacaccctttcctcacaggcacatagataccataatatatagtgacatttcataatcat |
344 |
Q |
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| T |
16826943 |
gagaaccacgtgtgtggttgtcattttgatgatccattatcaacaccctttcctcacaggcacatagataccataatatatagtgacatttcataatcat |
16827042 |
T |
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| Q |
345 |
atataattagcaactgttaataatggattacaataaatcattgtct |
390 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16827043 |
atataactagcaactgttaataatggattacaataaatcattgtct |
16827088 |
T |
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