View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_27 (Length: 378)
Name: NF11813_low_27
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 372
Target Start/End: Complemental strand, 28654934 - 28654744
Alignment:
| Q |
185 |
tccgagaggcgactcctagcatgtgtataagatga---cataaacataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacac |
281 |
Q |
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| T |
28654934 |
tccgagaggcaactcctaacatgtgtatatgatgatgacatagacataccattgcaataccgtctctagcagaaagagcaacaatatcagcacatgacac |
28654835 |
T |
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| Q |
282 |
tgtcaagggacattctttctcgacagcagctttgatggtgttcacatacttgaagtttctcatcccaaaacttctcactgatctctgctcc |
372 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||| |
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| T |
28654834 |
tgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctcc |
28654744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 205 - 372
Target Start/End: Complemental strand, 28635630 - 28635463
Alignment:
| Q |
205 |
atgtgtataagatgacataaacataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacactgtcaagggacattctttctcga |
304 |
Q |
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| T |
28635630 |
atgtgtatatgatgacatagacataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcga |
28635531 |
T |
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| Q |
305 |
cagcagctttgatggtgttcacatacttgaagtttctcatcccaaaacttctcactgatctctgctcc |
372 |
Q |
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| T |
28635530 |
cagctgctttgatggtattcacatacttgaaatttctcatcccaaaacttctcaccgatgtctgctcc |
28635463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 28605442 - 28605310
Alignment:
| Q |
225 |
acataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacactgtcaagggacattctttctcgacagcagctttgatggtgttc |
324 |
Q |
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| T |
28605442 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc |
28605343 |
T |
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| Q |
325 |
acatacttgaagtttctcatcccaaaacttctc |
357 |
Q |
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| T |
28605342 |
acatacttgaagtttctcatcccaaaacttctc |
28605310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 368
Target Start/End: Complemental strand, 28663294 - 28663150
Alignment:
| Q |
224 |
aacataccattgcaataccgtctctcgcagaaagagcgacaatgtcagcacatgacactgtcaagggacattctttctcgacagcagctttgatggtgtt |
323 |
Q |
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| T |
28663294 |
aacataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggtttt |
28663195 |
T |
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| Q |
324 |
cacatacttgaagtttctcatcccaaaacttctcactgatctctg |
368 |
Q |
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| T |
28663194 |
tacatacttgaagtttcgcatcccggaacttctctctgatgtctg |
28663150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 28635703 - 28635630
Alignment:
| Q |
106 |
tattagacgtcccaacttaagaaattattctattaagagggataatcatttgacttataagtttcactatgtga |
179 |
Q |
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| T |
28635703 |
tattaggcgtcccaatttaaaaaattattctattaagttggataatcatttgacttattagtctcactatgtga |
28635630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 28635791 - 28635752
Alignment:
| Q |
45 |
aaatattaattactcatactatttccatggtaattctttg |
84 |
Q |
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||||||||||||||||||||||||| | |||||||||||| |
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| T |
28635791 |
aaatattaattactcatactatttctaaggtaattctttg |
28635752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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