View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_31 (Length: 334)
Name: NF11813_low_31
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 77 - 327
Target Start/End: Complemental strand, 10357026 - 10356776
Alignment:
| Q |
77 |
cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10357026 |
cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa |
10356927 |
T |
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| Q |
177 |
ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg |
276 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
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| T |
10356926 |
ctattcctgtctgtgtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatccagcatccacaaacatatgatgggatacatcctg |
10356827 |
T |
|
| Q |
277 |
gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgctt |
327 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10356826 |
gaacgtgccagcattgtccctcctttagcggggtggttgaggcctttgctt |
10356776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 10133166 - 10133416
Alignment:
| Q |
77 |
cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa |
176 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10133166 |
cctaacctcattgcctcttgaagcgcccatcttactcctggtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa |
10133265 |
T |
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| Q |
177 |
ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg |
276 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10133266 |
ctattcttgtctgtgtcttgtttttcagaatcagcccccatcctgttcgtccgcttgaaaaacatctaacatccacaaacatatgatgggatacatcctg |
10133365 |
T |
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| Q |
277 |
gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgctt |
327 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
10133366 |
gaacgtgccagcattgtccctcctttggcggggtggttgaggcctttgctt |
10133416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 10135636 - 10135886
Alignment:
| Q |
77 |
cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa |
176 |
Q |
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|||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10135636 |
cctaacctcactgcctctcgaagcgcccatctaactcctagtgcttcggcctagcaagggtctacctccatcgattccaatttgcacttgctatgagtaa |
10135735 |
T |
|
| Q |
177 |
ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg |
276 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10135736 |
ctattcctgtctgtgtcttgtttttcagaatcagcccccatcctgtttgtgcgcttgaaaaacatctaacatccacaaacatatgatgggatacatcctg |
10135835 |
T |
|
| Q |
277 |
gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgctt |
327 |
Q |
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||||||||||||||||||| |||||| |||| ||||||||||||||||||| |
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| T |
10135836 |
gaacgtgccagcattgtccatcctttggcggggtggttgaggcctttgctt |
10135886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 10073585 - 10073835
Alignment:
| Q |
77 |
cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa |
176 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
10073585 |
cctaacctcactgccacttgaagcgcccatgtcactcgtagtgcttcggccaagcaagggtctacttccaccgaatccaatttgcacttgtgatgagtaa |
10073684 |
T |
|
| Q |
177 |
ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg |
276 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||| |||||| |
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| T |
10073685 |
ttattcctgtctgtgtctggtttttcagaatcagcccccatcctgtttgtccgtttgaaaaacatccagcatccacaaacatatgatgggatatatcctg |
10073784 |
T |
|
| Q |
277 |
gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgctt |
327 |
Q |
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| |||||||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
10073785 |
gcacgtgccatcattgtccctcctttggcggggtggttgaggcctttgctt |
10073835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10101504 - 10101560
Alignment:
| Q |
18 |
atttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac |
74 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||| |
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| T |
10101504 |
atttctataagctctctaagagggcttatgaaaacaacttttatcttatatgaaaac |
10101560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10212429 - 10212485
Alignment:
| Q |
18 |
atttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac |
74 |
Q |
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||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||| |
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| T |
10212429 |
atttctataagctctctaagagggcttatgaaaacaacttttatcttatatgaaaac |
10212485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 10357468 - 10357420
Alignment:
| Q |
25 |
taagctctctaagatggcttatgaaaataactcttatcttatacgaaaa |
73 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
10357468 |
taagctctctaagatggcttatgaaaacaacttgtatcttatatgaaaa |
10357420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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