View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_32 (Length: 324)
Name: NF11813_low_32
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 880723 - 880898
Alignment:
| Q |
115 |
gtcaaaattgatttcagaatgtttagagttaatttcaacatgtttaaattttgtcccgtaaacgattctaattctaacttaaaactaaacacagttttac |
214 |
Q |
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| T |
880723 |
gtcaaaattgatttcagaatatttagagttaatttcaacatgtttaaattttctcccgtaaacgattc------taacttaaaactagacacagttttac |
880816 |
T |
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| Q |
215 |
atgtatctaaccacaatcaataatgattcaacacatttttagtccaaatcaaattttgtcacctcagaaccaaacacatact |
296 |
Q |
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| T |
880817 |
atgtatctaaccacaatcaataatgattcaacacatttttagtccaaatcaaattttgtcacctcagaaccaaacacatact |
880898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 880690 - 880726
Alignment:
| Q |
18 |
gtttcactcaaataaaaaactttgcattacggtgtca |
54 |
Q |
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| T |
880690 |
gtttcactcaaatacaaaactttgcattacggtgtca |
880726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 19601718 - 19601754
Alignment:
| Q |
96 |
tggttccacttttggagcagtcaaaattgatttcaga |
132 |
Q |
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| T |
19601718 |
tggttccacttttggaggagtcaaaattgattccaga |
19601754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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