View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_39 (Length: 284)
Name: NF11813_low_39
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 54572416 - 54572668
Alignment:
| Q |
20 |
cttctcaccctctgccgtgctgaagcgtcgttattttgacttatcaagggcaatgcagatttcaacagtcatcaccactcgcagtgtattgattttggat |
119 |
Q |
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| T |
54572416 |
cttctcaccctccgccgtgctgaagcgtcgttattttgacttatcaagggcaatgcagatttcaacagtcatcaccactcgcagtgtattgattttggat |
54572515 |
T |
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| Q |
120 |
gagttgctacttgctattattagacaaatgtctactctttaaatgaataaaagaaagcaagtatatacaaacaactgcctacattttgtatcaagatatt |
219 |
Q |
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| T |
54572516 |
gagttgctatta---attattagacaaatgtctactctttaaatgaataaaagaaagcaagtatatacaaacaactgcctacattttgtatcaagatatt |
54572612 |
T |
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| Q |
220 |
tcgaatctccctccacatttgcttgcacgttttattt---ttacattcctatgctt |
272 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |
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| T |
54572613 |
tcgaatctccctacacatgtgcttgcacgttttatttaccttacattcctatgctt |
54572668 |
T |
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