View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_40 (Length: 270)
Name: NF11813_low_40
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 11734006 - 11734160
Alignment:
| Q |
116 |
aatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacacaactgcaattatctcaaaacaatacatattcaacatggct |
215 |
Q |
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| T |
11734006 |
aatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacacaactgcaattatctcaaaacaatacatattcaacatggct |
11734105 |
T |
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| Q |
216 |
aaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattc |
270 |
Q |
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| T |
11734106 |
aaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattc |
11734160 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 11733907 - 11733940
Alignment:
| Q |
17 |
aatatttgctactaaaaaacgatatttattcgta |
50 |
Q |
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| T |
11733907 |
aatatttgctactaaaaaacgatatttattcgta |
11733940 |
T |
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