View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_41 (Length: 261)
Name: NF11813_low_41
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_41 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 21264394 - 21264638
Alignment:
| Q |
17 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264394 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
21264493 |
T |
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| Q |
117 |
aaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
216 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264494 |
aaagccgtatgcagcaaaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
21264593 |
T |
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| Q |
217 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264594 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
21264638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 21259995 - 21260057
Alignment:
| Q |
199 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
261 |
Q |
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| T |
21259995 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
21260057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 47804966 - 47805210
Alignment:
| Q |
17 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804966 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
47805065 |
T |
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| Q |
117 |
aaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
216 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805066 |
aaagccgtatgcagcaaaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
47805165 |
T |
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| Q |
217 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805166 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
47805210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 47800566 - 47800627
Alignment:
| Q |
199 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatca |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47800566 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatca |
47800627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 34167840 - 34167698
Alignment:
| Q |
70 |
aatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattca |
169 |
Q |
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||||||||||||| | |||||| || || |||||||||| | ||||||||||| | || | | |||| ||||||||| ||||||||||| ||| |
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| T |
34167840 |
aatttccatttgtgagatctgaagatcaactagcagatatgttaacaaaagctgtctctagtaaagtctttcacaactcactagacaagttgggtattag |
34167741 |
T |
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| Q |
170 |
gaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
212 |
Q |
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||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
34167740 |
aaatatctactcaccaacttgagggggagtgttggcatgagtt |
34167698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 6847537 - 6847781
Alignment:
| Q |
17 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
116 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6847537 |
tgtggaagtagatcggcggtttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgagcaccagttagcagatatactcaca |
6847636 |
T |
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| Q |
117 |
aaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgc |
216 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6847637 |
aaagccgtatgcagcaaaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagcgttggcgtgagttatgc |
6847736 |
T |
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| Q |
217 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6847737 |
ctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
6847781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 6843115 - 6843178
Alignment:
| Q |
198 |
gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6843115 |
gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcag |
6843178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 5860856 - 5860714
Alignment:
| Q |
70 |
aatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattca |
169 |
Q |
| |
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||||||||||||| | |||||| || || |||||||||| | ||||||||||| | || | | |||| ||||||||| ||||||||||| ||| |
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| T |
5860856 |
aatttccatttgtgagatctgaagatcaactagcagatatgttaacaaaagctgtctctagtaaagtctttcacaactcactagacaagttgggtattag |
5860757 |
T |
|
| Q |
170 |
gaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
212 |
Q |
| |
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||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
5860756 |
aaatatctactcaccaacttgagggggagtgttggcatgagtt |
5860714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 38460251 - 38460058
Alignment:
| Q |
17 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
38460251 |
tgtggaagtagatcggcactttattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaagatcaattagcagatatactcaca |
38460152 |
T |
|
| Q |
117 |
aaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
210 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
38460151 |
aaagctgtatgtagcagagacttcttcaactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgttggtgtgag |
38460058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 18043522 - 18043375
Alignment:
| Q |
63 |
ataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagctgtatgcagcagaaactttttcaactcacttgacaagttgg |
162 |
Q |
| |
|
|||||||| |||||||||||||||||| | || || ||| |||||||||||||||||| |||||| | |||| |||||| |||||||||||| ||||||| |
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| T |
18043522 |
ataattcagtttccatttgttaaatctaaagatcaattatcagatatactcacaaaagttgtatgtaccagagacttttacaactcacttgataagttgg |
18043423 |
T |
|
| Q |
163 |
gcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
210 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
18043422 |
gcattcaagatctctgtgcaccaacttgaggggaagtgttggtgtgag |
18043375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 15646408 - 15646266
Alignment:
| Q |
70 |
aatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagctgtatgcagcagaaactttttcaactcacttgacaagttgggcattca |
169 |
Q |
| |
|
|||||||||| || | |||||| || || |||||||||| | ||||||||||||| || | | |||| ||||||||| ||||||||||| ||| |
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| T |
15646408 |
aatttccattcgtgagatctgaagatcaactagcagatatgttaacaaaagctgtatctagtaaagtctttcacaactcactagacaagttgggtattag |
15646309 |
T |
|
| Q |
170 |
gaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
212 |
Q |
| |
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||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
15646308 |
aaatatctactcaccaacttgagggggagtgttggcatgagtt |
15646266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 522561 - 522497
Alignment:
| Q |
146 |
ctcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
210 |
Q |
| |
|
||||||||||||||| |||||| | || ||| |||||||||||||||||||||||||| ||||| |
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| T |
522561 |
ctcacttgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgttggtgtgag |
522497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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