View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11813_low_44 (Length: 252)
Name: NF11813_low_44
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_44 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 42426119 - 42426335
Alignment:
| Q |
30 |
ttttcaagatcttcaccacattaatttgttgcagcaccaaacaatttcccatgnnnnnnnnnnnnnnnnnnnnnagtgggtttgcttgatagaaaagatg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42426119 |
ttttcatgatcttcaccacattaatttgttgcagcaccaaacaatttcccatgtttttctttttcttt------agtgggtttgcttgatagaaaagatg |
42426212 |
T |
|
| Q |
130 |
ctttagttagtttatttggtacacataaacaattccttgaatgatgtgattgtgagtgaatgaacaatgttttgcgcaatatataaaccaagtggttggg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42426213 |
ctttagttagtttatttggtacacataaacaattccttgaatgatgtgattgtgagtgaatgaacaatgttttgcgcaatatataaactaagtggttggg |
42426312 |
T |
|
| Q |
230 |
caaaatacccttatggtgtttca |
252 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42426313 |
caaaatacccttatggtgtttca |
42426335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University