View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_45 (Length: 251)
Name: NF11813_low_45
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_45 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24407059 - 24406831
Alignment:
| Q |
1 |
tcatatatatcacatcgcataagcaaaatgtacatgaagttggtatacaatactttttaattataat--atttcattt--att---atat-atatagttg |
92 |
Q |
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| T |
24407059 |
tcatatatatcacatcgcataagcaaaatgtacatgaagtttgtatacaatactttttaattatatttcattccattggaattggaatattatatagttg |
24406960 |
T |
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| Q |
93 |
tggcaagttttgaattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgccagttctctctaaaagccaaaggataaaaacaga |
192 |
Q |
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| T |
24406959 |
tggcaagttttgaattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgccagttctctctaaaagccaaaggataaaaacaga |
24406860 |
T |
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| Q |
193 |
acaacctcagctctaacacgttttcacaa |
221 |
Q |
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| T |
24406859 |
acaacctcagctctaacacgttttcacaa |
24406831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 24469535 - 24469616
Alignment:
| Q |
105 |
aattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgcca---gttctctctaaaagccaaaggata |
184 |
Q |
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| T |
24469535 |
aattaatttgactttatcaaatgtttcacacttga-gttctcaatcatgcttgccaattcttctctctaaaagccaaaggata |
24469616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 24422249 - 24422178
Alignment:
| Q |
93 |
tggcaagttttgaattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgccagttct |
165 |
Q |
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| T |
24422249 |
tggcaaatttggaattaatttgactttatcatatgtttcacacttg-ggctctcaatcatgcttgccaattct |
24422178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 3795 - 3876
Alignment:
| Q |
105 |
aattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgcca---gttctctctaaaagccaaaggata |
184 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3795 |
aattaatttgactttatcaaatgtttcacacttga-gttctcaatcatgcttgccaattcttctctctaaaagccaaaggata |
3876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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