View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_46 (Length: 251)
Name: NF11813_low_46
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 31651553 - 31651774
Alignment:
| Q |
20 |
cctttgagttcactttgtaatataaatctcttgtttcgttcaccattggcacttcatatatcgcaaggcttgcgtttacatattcattctgtatttagtg |
119 |
Q |
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| T |
31651553 |
cctttgagttcagtgtttaatataaatctcttgtttcgttcaccattggcacttcatatatcgcaagccttgcgtttacatattcattctgtatttaggg |
31651652 |
T |
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| Q |
120 |
aacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacctgtaggtgt |
219 |
Q |
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| T |
31651653 |
aacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacctgtaggtgt |
31651752 |
T |
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| Q |
220 |
gttgtgttctttctcccctatg |
241 |
Q |
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| T |
31651753 |
gttgtgttcattctcccttatg |
31651774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 31630079 - 31630185
Alignment:
| Q |
112 |
atttagtgaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacct |
211 |
Q |
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| T |
31630079 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
31630178 |
T |
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| Q |
212 |
gtaggtg |
218 |
Q |
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| T |
31630179 |
gtaggtg |
31630185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 31646167 - 31646292
Alignment:
| Q |
93 |
gtttacatattcattctgtatttagtgaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgc |
192 |
Q |
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| T |
31646167 |
gtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgc |
31646266 |
T |
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| Q |
193 |
tgattttacttttatacctgtaggtg |
218 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31646267 |
tgattttacttttatacctgtaggtg |
31646292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 31637332 - 31637459
Alignment:
| Q |
95 |
ttacatattcattctgtatttagtgaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctg |
194 |
Q |
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| T |
31637332 |
ttacatatttcttttgcatttagtgcacgaacaagctctggaacttttatcgacagaggatatgataaaattttgagcgatatcgagaaaagaattgctg |
31637431 |
T |
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| Q |
195 |
attttacttttatacctgtaggtgtgtt |
222 |
Q |
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| T |
31637432 |
attttacttttatacctgtaggtgtgtt |
31637459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 31656437 - 31656530
Alignment:
| Q |
125 |
acaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacctgtaggtg |
218 |
Q |
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| T |
31656437 |
acaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacctgtaggtg |
31656530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 9105507 - 9105454
Alignment:
| Q |
164 |
attgtgaagaatattgagagaagaattgctgattttacttttatacctgtaggt |
217 |
Q |
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| T |
9105507 |
attgtgaggaatattgagaaaaaaattgccgactttacttttattcctgtaggt |
9105454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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