View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_5 (Length: 695)
Name: NF11813_low_5
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 2845472 - 2846031
Alignment:
| Q |
1 |
ccaaattcgatataaatccatcgtaaactactttagagataacccaaacccgatataattctataatcatatattgtggtcgtcgcagataatccaaatc |
100 |
Q |
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| T |
2845472 |
ccaaatttgatataaatccatcgtaaactactttagagataacctaaacccgatataattctatcatcatatattgtggtcgtcgcagataatctaaatc |
2845571 |
T |
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| Q |
101 |
tgatataaatatatcaaaaacttcagcccagtcgcaaaggatccaaatccgataaaattatctcatcgcataccacagtcgtagaggatccaaatccgat |
200 |
Q |
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| T |
2845572 |
cgatataaatatatcaaaaactttagcccagtcgcaaaggatccaaatccgataaaattatctcatcgcataccacagtcgtagaggatccaaatccgat |
2845671 |
T |
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| Q |
201 |
ataaatatatatcaaaaacccatcttttagccctnnnnnnnnnnn-ccttttcttttctatatctcagagttcctcttcactttcctctgcataatttac |
299 |
Q |
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| T |
2845672 |
ataaatatatatcaaaaacccatcttttagccctaaaaaaataaaaccttttcttttctatatctcagagttcctcttcactttcctctgcataatttac |
2845771 |
T |
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| Q |
300 |
ccagnnnnnnnnn-ccctaattcccatctgaaaaattgataaaaattcaannnnnnnctcatggtgaaaaattcaacgaaggaagaatgtccaccggacc |
398 |
Q |
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| T |
2845772 |
ccagaaaaaaaaaaccctaattcccatctgaaaatttgataaaaattcaatttttttctcatggtgaaaaattcaacgaaggaagaatgtccaccggaca |
2845871 |
T |
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| Q |
399 |
atctccggtgcagccgtaccgacggccgacaatggcggtgcaaacgtcaagcgatggaaaacgtgaagttatgcgaagttcatcatcttcaacttcaaca |
498 |
Q |
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| T |
2845872 |
atctccggtgcagccgtaccgacggccgacaatggcggtgcaaacgtcgagcgatggaaaacgtgaagttatgcgaagttcatcatcttcaacttcaaca |
2845971 |
T |
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| Q |
499 |
tcgacagaagaaagtgaaggttccagaatcgttgaagcttcagagaaatatgaagatgaa |
558 |
Q |
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| T |
2845972 |
tcgacagaagaaagtgaaggttccagaatcgttgaagcttcagagaaatatgaagatgaa |
2846031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 634 - 677
Target Start/End: Original strand, 2846107 - 2846150
Alignment:
| Q |
634 |
cgatgttgttgatgtgcaattggatttgataagaatggtgttac |
677 |
Q |
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| T |
2846107 |
cgatgttgttgatgtgcaattggatttgataagaatggtgttac |
2846150 |
T |
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