View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_50 (Length: 242)
Name: NF11813_low_50
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 25040019 - 25039923
Alignment:
| Q |
66 |
ggcctcttaaaattcagttatttaaacttatctactgatataaacacttgtgatactgtttcggaaaacatataaagataaaaactattttcatatg |
162 |
Q |
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| T |
25040019 |
ggcctcttagaattcacttatttaaacttatctacttgtataaacacctgtgatactgtttcggaaaacatatgaagataaaaactattttcatatg |
25039923 |
T |
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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 25039884 - 25039824
Alignment:
| Q |
164 |
aaggtccgtgaactattttcagcttattttcatgatagcttatgaaaacatattatagcat |
224 |
Q |
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| T |
25039884 |
aaggtccgtaaactattttcagcttattttcatgatagcttatgaaaacatattatagcat |
25039824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 33385665 - 33385624
Alignment:
| Q |
85 |
atttaaacttatctactgatataaacacttgtgatactgttt |
126 |
Q |
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| T |
33385665 |
atttgaacttatctactgatataagcacttgtgaaactgttt |
33385624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 11095427 - 11095470
Alignment:
| Q |
83 |
ttatttaaacttatctactgatataaacacttgtgatactgttt |
126 |
Q |
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| T |
11095427 |
ttatttaagcttatctactgacataaacacttgtgatattgttt |
11095470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 19627568 - 19627609
Alignment:
| Q |
85 |
atttaaacttatctactgatataaacacttgtgatactgttt |
126 |
Q |
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| T |
19627568 |
atttgaacctatctactaatataaacacttgtgatactgttt |
19627609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 43199979 - 43199930
Alignment:
| Q |
77 |
attcagttatttaaacttatctactgatataaacacttgtgatactgttt |
126 |
Q |
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| T |
43199979 |
attcatttatttgaacttatctactcatataagcacttgtgagactgttt |
43199930 |
T |
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