View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_low_56 (Length: 229)

Name: NF11813_low_56
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_low_56
NF11813_low_56
[»] chr5 (18 HSPs)
chr5 (7-218)||(20629658-20629869)
chr5 (84-143)||(3999085-3999144)
chr5 (88-218)||(32391722-32391851)
chr5 (74-132)||(2974901-2974959)
chr5 (82-217)||(12406038-12406172)
chr5 (88-132)||(20512466-20512510)
chr5 (87-132)||(3333694-3333739)
chr5 (88-133)||(25910991-25911036)
chr5 (78-142)||(19340757-19340821)
chr5 (88-132)||(36798443-36798487)
chr5 (88-132)||(39574242-39574286)
chr5 (84-132)||(43098027-43098075)
chr5 (82-132)||(35166559-35166610)
chr5 (85-132)||(40133146-40133193)
chr5 (88-143)||(40276286-40276341)
chr5 (153-217)||(6130321-6130386)
chr5 (83-132)||(24405488-24405537)
chr5 (88-132)||(37897984-37898028)
[»] chr2 (23 HSPs)
chr2 (75-135)||(34761124-34761184)
chr2 (78-132)||(14489477-14489531)
chr2 (88-217)||(31827716-31827842)
chr2 (74-138)||(15392954-15393018)
chr2 (71-143)||(37431793-37431865)
chr2 (76-217)||(6592917-6593055)
chr2 (83-217)||(19206140-19206272)
chr2 (84-132)||(43029061-43029108)
chr2 (79-217)||(35718839-35718975)
chr2 (83-132)||(5362173-5362222)
chr2 (153-217)||(5470394-5470458)
chr2 (83-143)||(6592722-6592782)
chr2 (79-143)||(37803388-37803452)
chr2 (86-132)||(6510266-6510312)
chr2 (88-142)||(18709250-18709304)
chr2 (83-133)||(32969793-32969843)
chr2 (88-132)||(14943810-14943854)
chr2 (88-132)||(16043292-16043336)
chr2 (88-132)||(21358372-21358416)
chr2 (88-132)||(34679100-34679144)
chr2 (88-132)||(34679357-34679401)
chr2 (169-217)||(37803314-37803362)
chr2 (88-132)||(39918437-39918481)
[»] chr7 (21 HSPs)
chr7 (81-132)||(19645068-19645119)
chr7 (88-217)||(4049904-4050032)
chr7 (88-217)||(15348140-15348269)
chr7 (80-132)||(6792063-6792115)
chr7 (88-131)||(21748082-21748125)
chr7 (88-143)||(47909697-47909752)
chr7 (109-217)||(5172706-5172815)
chr7 (88-142)||(20185172-20185226)
chr7 (82-128)||(20505095-20505141)
chr7 (88-133)||(8074141-8074186)
chr7 (81-132)||(3318314-3318365)
chr7 (81-143)||(18186708-18186770)
chr7 (82-132)||(23826289-23826339)
chr7 (84-142)||(35250374-35250431)
chr7 (88-129)||(11373850-11373891)
chr7 (88-217)||(36580277-36580404)
chr7 (88-132)||(14247297-14247341)
chr7 (88-132)||(17876424-17876468)
chr7 (88-132)||(28350119-28350163)
chr7 (83-143)||(41243642-41243702)
chr7 (88-132)||(41243911-41243955)
[»] chr3 (29 HSPs)
chr3 (83-142)||(28204478-28204537)
chr3 (74-142)||(46226944-46227012)
chr3 (83-142)||(14349365-14349424)
chr3 (84-142)||(38178710-38178768)
chr3 (88-132)||(17773173-17773217)
chr3 (88-132)||(19074474-19074518)
chr3 (76-132)||(36677515-36677571)
chr3 (76-132)||(36687597-36687653)
chr3 (80-132)||(51315751-51315803)
chr3 (85-132)||(44586053-44586100)
chr3 (78-132)||(4474334-4474388)
chr3 (83-143)||(3193037-3193097)
chr3 (88-132)||(14856549-14856593)
chr3 (80-132)||(38958110-38958162)
chr3 (88-132)||(48348258-48348302)
chr3 (88-143)||(33329614-33329669)
chr3 (83-133)||(36687861-36687911)
chr3 (81-143)||(42686478-42686540)
chr3 (88-133)||(19404401-19404446)
chr3 (153-217)||(1814615-1814679)
chr3 (88-132)||(14340736-14340780)
chr3 (83-143)||(25154437-25154497)
chr3 (86-142)||(25248942-25248998)
chr3 (88-132)||(25902620-25902664)
chr3 (88-132)||(38177181-38177225)
chr3 (87-143)||(43586571-43586626)
chr3 (84-132)||(43747278-43747326)
chr3 (88-132)||(53184784-53184828)
chr3 (88-132)||(54718997-54719041)
[»] chr6 (14 HSPs)
chr6 (80-142)||(238925-238987)
chr6 (74-214)||(12766401-12766539)
chr6 (83-132)||(3579593-3579642)
chr6 (165-217)||(2853506-2853558)
chr6 (84-132)||(1377473-1377521)
chr6 (84-132)||(1385221-1385269)
chr6 (88-132)||(28011391-28011435)
chr6 (80-142)||(2203182-2203244)
chr6 (92-142)||(18030944-18030994)
chr6 (154-212)||(26601528-26601586)
chr6 (87-131)||(239213-239257)
chr6 (83-143)||(5003335-5003394)
chr6 (88-132)||(30349352-30349396)
chr6 (169-217)||(30349538-30349586)
[»] chr8 (23 HSPs)
chr8 (83-132)||(23702121-23702170)
chr8 (88-132)||(17070910-17070954)
chr8 (88-132)||(17577318-17577362)
chr8 (84-132)||(37263357-37263405)
chr8 (90-132)||(22192307-22192349)
chr8 (82-143)||(41602867-41602928)
chr8 (80-132)||(29657965-29658017)
chr8 (80-132)||(39889767-39889819)
chr8 (76-217)||(27545539-27545678)
chr8 (88-132)||(37813165-37813209)
chr8 (88-211)||(41487203-41487326)
chr8 (81-133)||(41487475-41487527)
chr8 (88-143)||(23702390-23702445)
chr8 (82-133)||(25144206-25144257)
chr8 (80-142)||(20853373-20853435)
chr8 (86-132)||(25896991-25897037)
chr8 (88-142)||(35213034-35213088)
chr8 (88-133)||(521708-521753)
chr8 (83-132)||(28349574-28349623)
chr8 (83-132)||(30539258-30539306)
chr8 (91-132)||(33298600-33298641)
chr8 (84-132)||(45456965-45457013)
chr8 (80-132)||(45515928-45515980)
[»] scaffold0062 (1 HSPs)
scaffold0062 (91-143)||(46082-46134)
[»] chr1 (27 HSPs)
chr1 (80-132)||(25085394-25085446)
chr1 (84-132)||(46912189-46912237)
chr1 (88-132)||(39642203-39642247)
chr1 (82-133)||(25486478-25486529)
chr1 (82-132)||(41997637-41997687)
chr1 (85-142)||(45739190-45739247)
chr1 (88-132)||(5287841-5287885)
chr1 (80-132)||(7060622-7060674)
chr1 (84-132)||(7579662-7579710)
chr1 (88-132)||(18632320-18632364)
chr1 (88-132)||(18632606-18632650)
chr1 (84-132)||(50401638-50401686)
chr1 (84-142)||(16545819-16545877)
chr1 (84-142)||(51251382-51251439)
chr1 (83-132)||(1853444-1853493)
chr1 (83-132)||(14190540-14190589)
chr1 (79-132)||(23220828-23220881)
chr1 (88-132)||(1096470-1096514)
chr1 (88-132)||(3377504-3377548)
chr1 (88-132)||(3377778-3377822)
chr1 (84-132)||(11050433-11050480)
chr1 (88-132)||(14978800-14978844)
chr1 (86-130)||(16874509-16874553)
chr1 (83-143)||(17692725-17692785)
chr1 (88-132)||(23891663-23891707)
chr1 (153-217)||(32295019-32295083)
chr1 (88-132)||(48319673-48319716)
[»] chr4 (31 HSPs)
chr4 (80-132)||(14449268-14449320)
chr4 (80-132)||(16292534-16292586)
chr4 (80-132)||(35393936-35393988)
chr4 (81-132)||(1420811-1420862)
chr4 (81-132)||(51362807-51362858)
chr4 (80-208)||(2016980-2017107)
chr4 (84-133)||(4411492-4411541)
chr4 (83-132)||(6614845-6614894)
chr4 (153-217)||(2181308-2181372)
chr4 (84-132)||(12719450-12719498)
chr4 (88-132)||(23759564-23759608)
chr4 (88-132)||(35383768-35383812)
chr4 (88-132)||(43074619-43074663)
chr4 (88-143)||(14016723-14016778)
chr4 (85-132)||(50769363-50769410)
chr4 (88-142)||(1420538-1420592)
chr4 (80-134)||(34771267-34771321)
chr4 (153-217)||(10059750-10059815)
chr4 (83-132)||(44356664-44356712)
chr4 (168-217)||(51362722-51362771)
chr4 (153-217)||(6614912-6614975)
chr4 (88-132)||(19909176-19909220)
chr4 (80-132)||(21322702-21322754)
chr4 (88-132)||(21451462-21451506)
chr4 (88-132)||(21957734-21957778)
chr4 (88-132)||(35615435-35615478)
chr4 (88-132)||(43074833-43074877)
chr4 (88-132)||(49185826-49185869)
chr4 (88-132)||(50769628-50769672)
chr4 (88-132)||(51371730-51371774)
chr4 (88-132)||(53312552-53312596)
[»] scaffold1458 (1 HSPs)
scaffold1458 (83-132)||(1469-1518)
[»] scaffold0515 (1 HSPs)
scaffold0515 (83-132)||(3637-3686)
[»] scaffold0417 (1 HSPs)
scaffold0417 (83-132)||(9604-9653)
[»] scaffold0306 (1 HSPs)
scaffold0306 (83-132)||(3637-3686)
[»] scaffold0025 (1 HSPs)
scaffold0025 (83-131)||(19038-19086)
[»] scaffold0725 (1 HSPs)
scaffold0725 (79-133)||(6697-6751)
[»] scaffold0372 (1 HSPs)
scaffold0372 (88-132)||(127-171)
[»] scaffold0250 (1 HSPs)
scaffold0250 (88-132)||(3575-3619)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 20629658 - 20629869
Alignment:
Q  7 gttgaaacattataatgtaaataaacgaagcatgccaaatgtaataaatttcatccatgtaaatgacaatatattttaggtttaatagcagttttcgccc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20629658 gttgaaacattataatgtaaataaacgaagcatgccaaatgtaataaatttcatccatgtaaatgacaatatattttaggtttaatagcagttttcgccc 20629757  T
Q  107 cttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggcc 206  Q
    |||||||||||||||||||||||||||||| ||||||         ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  20629758 cttaactttcacaaagttgcgattttaaccccctaagaaaaaaaaactacaaaacaaccccctaagttttgaaactgtaacagttttggtccccaaggcc 20629857  T
Q  207 aatttttggtag 218  Q
    ||||||||||||    
T  20629858 aatttttggtag 20629869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 3999085 - 3999144
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||    
T  3999085 aggtttaatagcagttttcgccccctaactttcacgaagttgcgattttgaccccctaag 3999144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 32391722 - 32391851
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaac 187  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||  || | ||||         ||||||||  ||||||||||| ||| ||||||| |    
T  32391722 ttaatagcagttttcgccccttaactttcacgaagttgtgattttggccccttaag--aaaaaaactacaaaatcaccccctaagttttgcaactgtagc 32391819  T
Q  188 agatttgg-tccccaaggccaatttttggtag 218  Q
    || |||||  ||||||||||||||||||||||    
T  32391820 agttttggccccccaaggccaatttttggtag 32391851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 2974959 - 2974901
Alignment:
Q  74 aatatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||| |||||||||||||| ||||| |||||||||| |||||||||||||    
T  2974959 aatagattttaggcttaatagcagtttttgccccctaactttcacgaagttgcgatttt 2974901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 12406038 - 12406172
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaac 181  Q
    ||||| |||||||||||||| ||||| |||||||| |||||||||||||||  || ||||||         |||||||||  |||||||||| ||| |||    
T  12406038 ttaggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag-aaagaaaactacaaaaccgccccctaagttttgcaac 12406136  T
Q  182 tgtaacagatttgg-tccccaaggccaatttttggta 217  Q
    ||| |||| |||||  |||||||||||||||||||||    
T  12406137 tgt-acagttttggccccccaaggccaatttttggta 12406172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 20512510 - 20512466
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  20512510 ttaatagcagttttcgcctcttaactttcacgaagttgcgatttt 20512466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 3333694 - 3333739
Alignment:
Q  87 tttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||    
T  3333694 tttaatagcagttttcgccccctaactttcatgaagttgcgatttt 3333739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 25911036 - 25910991
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||    
T  25911036 ttaatagcagttttcgccccctaactttcacgaagttgagatttta 25910991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 19340757 - 19340821
Alignment:
Q  78 tattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||| |||||||||||||||||| ||||| |||||||  |||| |||||||||| ||| |||||    
T  19340757 tatttaaggtttaatagcagttttagccccctaacttttccaaaattgcgattttgaccccctaa 19340821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 36798487 - 36798443
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||    
T  36798487 ttaatagcagttttagccccctaactttctcaaagttgcgatttt 36798443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 39574242 - 39574286
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||  |||||||||| |||||||||||||    
T  39574242 ttaatagcagttttcgccctctaactttcacgaagttgcgatttt 39574286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 43098027 - 43098075
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| ||| ||||||| || |||||||||||||    
T  43098027 aggtttaatagcagttttcgtcccctaacttttacgaagttgcgatttt 43098075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 35166610 - 35166559
Alignment:
Q  82 ttaggtttaatagcagttttcg-ccccttaactttcacaaagttgcgatttt 132  Q
    ||||| |||||||||||||||| |||| |||||||||| |||||||||||||    
T  35166610 ttaggcttaatagcagttttcgcccccctaactttcacgaagttgcgatttt 35166559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 40133193 - 40133146
Alignment:
Q  85 ggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  40133193 ggtttaatagcaattttagccccctaactttcccaaagttgcgatttt 40133146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 40276341 - 40276286
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    ||||||||||||||  |||| |||||||| |||| |||||||||||||| ||||||    
T  40276341 ttaatagcagttttatccccctaactttcccaaatttgcgattttaaccccctaag 40276286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 6130321 - 6130386
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtcccc-aaggccaatttttggta 217  Q
    ||||||||| | ||||||||| ||| ||||||| ||| ||||| |||| |||||||||||||||||    
T  6130321 ctacaaaaccatcccctaagttttgcaactgtagcagttttggccccccaaggccaatttttggta 6130386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 24405488 - 24405537
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||| | ||| |||||||  |||||||||||||||    
T  24405488 taggtttaatagcagttttagtcccctaactttttcaaagttgcgatttt 24405537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 37898028 - 37897984
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||    
T  37898028 ttaatagcagttttagccccctaactttttcaaagttgcgatttt 37897984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 34761184 - 34761124
Alignment:
Q  75 atatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaac 135  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  34761184 atatattttaggtttaatagcagttttcgtcccctaactttcacgaagttgcgattttaac 34761124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 14489531 - 14489477
Alignment:
Q  78 tattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  14489531 tattttaggcttaatagcagttttcgccccctaactttcacgaagttgcgatttt 14489477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 31827842 - 31827716
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaac 187  Q
    ||||||||| |||||||||| ||||||| || ||||||||||| | ||||||||||          |||||||  ||||||||||| ||| ||||||| |    
T  31827842 ttaatagcaattttcgccccctaacttttacgaagttgcgattatgacctcctaagaaaaaaa---tacaaaatcaccccctaagttttgcaactgtagc 31827746  T
Q  188 agatttggtccccaaggccaatttttggta 217  Q
    || ||||| |||||||||||||||||||||    
T  31827745 agttttggcccccaaggccaatttttggta 31827716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 15393018 - 15392954
Alignment:
Q  74 aatatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctc 138  Q
    |||||||||||||||||||||||||||| | | ||||| | |||||||||||||||||| |||||    
T  15393018 aatatattttaggtttaatagcagttttggtctcttaagtatcacaaagttgcgattttgacctc 15392954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 37431865 - 37431793
Alignment:
Q  71 gacaatatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||| || || |||||||||||||||||||||||| |||||| ||| |||||||||||||  |||||||||    
T  37431865 gacaatttaattaaggtttaatagcagttttcgccccctaacttccacgaagttgcgattttggcctcctaag 37431793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 6593055 - 6592917
Alignment:
Q  76 tatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtct 175  Q
    ||||||||||| |||| || |||||||||| | |||||||||| |||||||||||||| || ||| |          |||||||||  |||||||||| |    
T  6593055 tatattttaggcttaacagtagttttcgccacctaactttcacgaagttgcgattttagccccctta---aaaaaaactacaaaactgccccctaagttt 6592959  T
Q  176 tgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    || ||||||| ||| ||||| |||||| ||||||||||||||    
T  6592958 tgcaactgtagcagttttggcccccaaagccaatttttggta 6592917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 19206140 - 19206272
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaact 182  Q
    |||| ||||||||| |||||||||| ||| ||||||||||||||||||||  || |||||          ||||||||| ||||||||||| ||  ||||    
T  19206140 taggcttaatagcaattttcgccccctaattttcacaaagttgcgattttggccccctaa---aaaaaaactacaaaaccaccccctaagttttacaact 19206236  T
Q  183 gtaacagatttgg-tccccaaggccaatttttggta 217  Q
    ||| ||| |||||  |||||||||||||||||||||    
T  19206237 gtagcagttttggccccccaaggccaatttttggta 19206272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 43029108 - 43029061
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  43029108 aggtttaatagcagtttttgccc-ttaactttcacaaagttgcgatttt 43029061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 35718975 - 35718839
Alignment:
Q  79 attttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttga 178  Q
    |||| ||||||||||||||||| |||| | |||||||||| |||||||||| || | ||||||||         |||||||||   ||||||||| |||     
T  35718975 atttaaggtttaatagcagtttccgcctcctaactttcacgaagttgcgatcttgatctcctaag--aaaaaaactacaaaaccgtcccctaagttttgc 35718878  T
Q  179 aactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||||| ||| ||||| ||| |||| ||||||||||||    
T  35718877 aactgtagcagttttggcccctaaggtcaatttttggta 35718839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 5362173 - 5362222
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||||||    
T  5362173 taggcttaatagtaattttcgccccctaactttcacaaagttgcgatttt 5362222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 5470394 - 5470458
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    |||||||||  |||||||||| ||| || |||| ||| ||||| |||||||||||||||||||||    
T  5470394 ctacaaaactgccccctaagttttgcaattgtagcagttttggcccccaaggccaatttttggta 5470458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 6592722 - 6592782
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||| |||||||||||||| ||||| |||||||  ||||||||||||||| ||| ||||||    
T  6592722 taggcttaatagcagttttagccccctaacttttccaaagttgcgattttgaccccctaag 6592782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 37803452 - 37803388
Alignment:
Q  79 attttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    ||||| || |||||| || |||||||||| ||||||| || ||||||||||||| ||||||||||    
T  37803452 attttcggcttaataacaattttcgccccctaacttttacgaagttgcgattttgacctcctaag 37803388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 6510312 - 6510266
Alignment:
Q  86 gtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||||  |||||||||  |||||||||||||    
T  6510312 gtttaatagcagttttcgccctctaactttcatgaagttgcgatttt 6510266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 18709250 - 18709304
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||||||||||||| ||| |||||||||| ||||| |||||||  ||||||||    
T  18709250 ttaatagcagttttcgtcccctaactttcacgaagtttcgattttggcctcctaa 18709304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 32969843 - 32969793
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    |||| |||||||||||||||||||| ||||||||||  |||| ||||||||    
T  32969843 taggcttaatagcagttttcgccccctaactttcacggagtttcgatttta 32969793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 14943854 - 14943810
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| |||||||||||||  |||||||| ||||||    
T  14943854 ttaatagcagttttagccccttaacttttccaaagttgtgatttt 14943810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 16043336 - 16043292
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| ||||||||||||||| |||||||||| ||||| |||||||    
T  16043336 ttaacagcagttttcgccccctaactttcacgaagttacgatttt 16043292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 21358416 - 21358372
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||||    
T  21358416 ttaatagcagtttttgccccctaactttctcaaagttgtgatttt 21358372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 34679100 - 34679144
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||    
T  34679100 ttaatagcagttttagccccctaacttttccaaagttgcgatttt 34679144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 34679401 - 34679357
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||||| |||||| ||||||    
T  34679401 ttaatagcagtttttgccccctaactttcacgaagttgtgatttt 34679357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 37803362 - 37803314
Alignment:
Q  169 taagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||| ||| ||||||| ||| |||| ||||||||||||||||||||||    
T  37803362 taagttttgcaactgtagcagttttgatccccaaggccaatttttggta 37803314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 39918437 - 39918481
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||    
T  39918437 ttaatagtagttttagccccctaactttctcaaagttgcgatttt 39918481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 19645119 - 19645068
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  19645119 tttaggtttaatagcaattttcgccccttaactttcacgaagttgcgatttt 19645068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 4050032 - 4049904
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaac 187  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||  || ||||||         |||||||||  |||||||||  ||| ||||||| |    
T  4050032 ttaatagcagttttcgccccttaactttcacgaagttgtgattttggccccctaag--aaaaaaactacaaaaccgccccctaaggtttgcaactgtagc 4049935  T
Q  188 agatttgg-tccccaaggccaatttttggta 217  Q
    || |||||  |||||||||||||||||||||    
T  4049934 agttttggccccccaaggccaatttttggta 4049904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 15348269 - 15348140
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaac 187  Q
    ||||||||||| ||| |||| |||||||||| ||||||||||||| | |  |||||         |||||||||  |||||||||| ||| ||| ||| |    
T  15348269 ttaatagcagtattcaccccctaactttcacgaagttgcgattttgatcctctaagaaaaaaaaactacaaaaccgccccctaagttttgcaaccgtagc 15348170  T
Q  188 agatttggtccccaaggccaatttttggta 217  Q
    || ||||| |||||||||||||||||||||    
T  15348169 agttttggcccccaaggccaatttttggta 15348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 6792115 - 6792063
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||||| ||||| |||||||  |||||||||||||||    
T  6792115 ttttaggtttaatagcagttttagccccctaacttttccaaagttgcgatttt 6792063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 21748125 - 21748082
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattt 131  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  21748125 ttaatagcagttttcgccccctaactttcacgaagttgcgattt 21748082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 47909697 - 47909752
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||| || ||||||    
T  47909697 ttaatagcagttttagccccctaactttcccaaagttgcgattttagccccctaag 47909752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 5172815 - 5172706
Alignment:
Q  109 taactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaacagatttggtcccc-aaggcca 207  Q
    ||||||| || ||||||||||||| ||| ||||||         |||||||||  |||||||||| ||| ||||||| ||| |||||||||| |||||||    
T  5172815 taacttttacgaagttgcgattttgaccccctaaggaaaaaaaactacaaaaccgccccctaagttttgcaactgtagcagttttggtcccccaaggcca 5172716  T
Q  208 atttttggta 217  Q
    ||||||||||    
T  5172715 atttttggta 5172706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 20185226 - 20185172
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||| ||| |||||    
T  20185226 ttaatagtagttttcgccccctaactttcacgaagttgcgattttgaccccctaa 20185172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 20505095 - 20505141
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcga 128  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||    
T  20505095 ttaggtttaatagcagttttagccccctaactttctcaaagttgcga 20505141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 8074186 - 8074141
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||    
T  8074186 ttaatagcagttttcgccccctaactttcacgaagttacgatttta 8074141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 3318314 - 3318365
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||| ||||||| |||||| |||||||||||||  |||||||||||||||    
T  3318314 tttaggcttaataggagttttagccccttaacttttccaaagttgcgatttt 3318365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 18186770 - 18186708
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||| |||||||||||||||| ||||| |||||||  ||||||| ||||||| ||| ||||||    
T  18186770 tttaagtttaatagcagttttagccccctaacttttccaaagttacgattttgaccccctaag 18186708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 23826339 - 23826289
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||| |||||||||||||| | ||| |||||||||| |||||||||||||    
T  23826339 ttaggcttaatagcagtttttgtcccctaactttcacgaagttgcgatttt 23826289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 35250431 - 35250374
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||||||||| ||||| |||||| |||||| |||||||||||||||| ||| |||||    
T  35250431 aggtttaatagcggtttttgcccct-aactttgacaaagttgcgattttgaccccctaa 35250374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 11373850 - 11373891
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgat 129  Q
    |||||||||||||||||||| ||||||| || ||||||||||    
T  11373850 ttaatagcagttttcgccccctaacttttacgaagttgcgat 11373891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 36580277 - 36580404
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaac 187  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||||   | ||||||         |||||||||   ||||||||| ||| ||||||| |    
T  36580277 ttaatagcagttttcggcccctaactttcacgaagttgtgattttggtcccctaag--aaaaaaactacaaaaccgtcccctaagttttgcaactgtagc 36580374  T
Q  188 agatttggtccccaaggccaatttttggta 217  Q
    || ||||| | |||||||||||||||||||    
T  36580375 agttttggccaccaaggccaatttttggta 36580404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 14247297 - 14247341
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||| | |||||||||| |||||| ||||||    
T  14247297 ttaatagcagttttcgccacctaactttcacgaagttgtgatttt 14247341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 17876468 - 17876424
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||| |||| |||||||||| ||||| |||||||    
T  17876468 ttaatagcagttttcaccccctaactttcacgaagttacgatttt 17876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 28350119 - 28350163
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||||| ||||| |||||||    
T  28350119 ttaatagcagttttagccccctaactttcacgaagttacgatttt 28350163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 41243642 - 41243702
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||| |||||||||||||| ||||| |||||||  ||||||||| |||||| || ||||||    
T  41243642 taggcttaatagcagttttagccccctaacttttccaaagttgcaattttagccccctaag 41243702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 41243955 - 41243911
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||  || |||||||||||||||| |||||||    
T  41243955 ttaatagcagttttcggtccctaactttcacaaagttacgatttt 41243911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 28204478 - 28204537
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  28204478 taggcttaatagcagttttcgccccttaactttcacgaagttgcgattttgaccccctaa 28204537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 46227012 - 46226944
Alignment:
Q  74 aatatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||| |||||| |||||||||||||||| ||| |||||||||| ||||||||||||| ||| |||||    
T  46227012 aatatagtttaggattaatagcagttttcgtcccctaactttcacgaagttgcgattttgaccccctaa 46226944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 14349424 - 14349365
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||| |||||||||||||||||||| ||||||| || ||||||||||||||||| |||||    
T  14349424 taggcttaatagcagttttcgccccctaacttttacgaagttgcgattttaaccccctaa 14349365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 38178768 - 38178710
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||||| |||| |||||||||| |||||| ||||||||||||||||||||| |||||    
T  38178768 aggtttaacagcaattttcgccccctaacttacacaaagttgcgattttaaccccctaa 38178710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 17773173 - 17773217
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  17773173 ttaatagcagttttcgccccctaactttcactaagttgcgatttt 17773217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 19074474 - 19074518
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  19074474 ttaatagcagttttcgccccctaactttcactaagttgcgatttt 19074518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 36677515 - 36677571
Alignment:
Q  76 tatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||| |||||| ||||||||||||  |||||||||| |||||||||||||    
T  36677515 tatattttaggcttaataacagttttcgcccgctaactttcacgaagttgcgatttt 36677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 36687597 - 36687653
Alignment:
Q  76 tatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||| |||||| ||||||||||||  |||||||||| |||||||||||||    
T  36687597 tatattttaggcttaataacagttttcgcccgctaactttcacgaagttgcgatttt 36687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 51315803 - 51315751
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||||| ||||| |||||||| |||||||||||||||    
T  51315803 ttttaggcttaatagcagttttagccccctaactttcccaaagttgcgatttt 51315751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 44586100 - 44586053
Alignment:
Q  85 ggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  44586100 ggtttaatagcagttttagccccctaactttcccaaagttgcgatttt 44586053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 4474388 - 4474334
Alignment:
Q  78 tattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||||| || | ||||||| || |||||||||||||    
T  4474388 tattttaggtttaatagcagttttctcctcctaacttttacgaagttgcgatttt 4474334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 3193097 - 3193037
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||| ||||||||||||||| |||| |||||||||  ||||||||||||| ||| ||||||    
T  3193097 taggcttaatagcagttttcaccccctaactttcaagaagttgcgattttgaccccctaag 3193037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 14856549 - 14856593
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||| || |||||||||| |||||||||||||    
T  14856549 ttaatagcagttttcgcaccctaactttcacgaagttgcgatttt 14856593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 38958162 - 38958110
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||||||||||| |||||||||| || || |||||||    
T  38958162 ttttaggcttaatagcagttttcgccccctaactttcacgaaattacgatttt 38958110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 48348258 - 48348302
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  48348258 ttaatagcagttttcgccccctaacttttacgaagttgcgatttt 48348302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 33329614 - 33329669
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||||||||  ||||||| || ||||||||||||| ||| ||||||    
T  33329614 ttaatagcagttttcgccctctaacttttacgaagttgcgattttgaccccctaag 33329669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 36687911 - 36687861
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    ||||||||||||||||||| |||| |||| |||  ||||||||||||||||    
T  36687911 taggtttaatagcagttttagcccattaatttttccaaagttgcgatttta 36687861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 42686478 - 42686540
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||||||||||  || | ||| ||||| |||||||||||||| ||| ||||||    
T  42686478 tttaggtttaatagcagttttaacctcctaagtttcaaaaagttgcgattttgaccccctaag 42686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 19404401 - 19404446
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    |||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  19404401 ttaataacagttttcgtcccctaactttcacgaagttgcgatttta 19404446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 1814615 - 1814679
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||||||| ||||| ||||| ||| |||| || ||| ||| | |||||||||||||||||||||    
T  1814615 ctacaaaaccaccccttaagttttgcaactatagcagtttttgcccccaaggccaatttttggta 1814679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 14340736 - 14340780
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||||    
T  14340736 ttaataggagttttcgccccctaactttcacgaagttacgatttt 14340780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 25154497 - 25154437
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||| ||||||||||||||  |||| |||||||  |||||||| |||||| ||||||||||    
T  25154497 taggcttaatagcagttttaaccccctaactttaccaaagttgtgattttgacctcctaag 25154437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 25248998 - 25248942
Alignment:
Q  86 gtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||||  ||||||||||| |||| |||||| |||||||||||||  ||||||||    
T  25248998 gtttaataatagttttcgccctttaattttcacgaagttgcgattttggcctcctaa 25248942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 25902664 - 25902620
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||    
T  25902664 ttaatatcagttttagccccctaactttctcaaagttgcgatttt 25902620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 38177181 - 38177225
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||| ||| |||| |||||||||||||| |||||||||||||||    
T  38177181 ttaatggcaattttagccccttaactttcccaaagttgcgatttt 38177225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 43586571 - 43586626
Alignment:
Q  87 tttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||| |||||||||||||| ||  ||||||||||||  |||||||||    
T  43586571 tttaatagcagttt-cgccccttaacttttacggagttgcgattttggcctcctaag 43586626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 43747278 - 43747326
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| ||  ||||||| || |||||||||||||    
T  43747278 aggtttaatagcagttttcgtcctataacttttacgaagttgcgatttt 43747326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 53184828 - 53184784
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||| || ||||||| || |||||||||||||    
T  53184828 ttaatagcagttttcgctccctaacttttacgaagttgcgatttt 53184784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 54718997 - 54719041
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||    
T  54718997 ttaatagcagttttcgtccactaactttcacgaagttgcgatttt 54719041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 238925 - 238987
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||||||||    
T  238925 ttttaggcttaatagcagttttcgccccctaattttcacgaagttgcgattttgacctcctaa 238987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 12766539 - 12766401
Alignment:
Q  74 aatatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagt 173  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||||| |||||||||||||  || |||||          |||||||||  |||| |||||    
T  12766539 aatatatttaaggcttaatagcagttttcaccccctaactttcacgaagttgcgattttggccccctaa--aaaaaaaactacaaaaccgccccttaagt 12766442  T
Q  174 cttgaaactgtaacagatttggtccccaaggccaatttttg 214  Q
     ||| ||||||| ||| ||||| ||||||||||||||||||    
T  12766441 tttgcaactgtagcagttttggcccccaaggccaatttttg 12766401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 3579593 - 3579642
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||||||    
T  3579593 taggcttaatagcagttttcgtcccttaactttcacgaagttgcgatttt 3579642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 2853506 - 2853558
Alignment:
Q  165 cccctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||    
T  2853506 cccctaagttttgcaactgtagcagttttggtccccaaggccaatttttggta 2853558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 1377521 - 1377473
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||| ||||||||| ||| |||||||||| |||||||||||||    
T  1377521 aggtttaatatcagttttcgtcccctaactttcacgaagttgcgatttt 1377473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 1385269 - 1385221
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||| ||||||||| ||| |||||||||| |||||||||||||    
T  1385269 aggtttaatatcagttttcgtcccctaactttcacgaagttgcgatttt 1385221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 28011435 - 28011391
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||    
T  28011435 ttaatagcagttttcaccccctaactttcacgaagttgcgatttt 28011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 2203182 - 2203244
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||| ||||||||| |||| || || |||||||| |||||||||||||||  ||||||||    
T  2203182 ttttaggcttaatagcaattttagctccctaactttcccaaagttgcgattttggcctcctaa 2203244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 18030944 - 18030994
Alignment:
Q  92 tagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||||||| |||| |||||||||| |||||||||||||  ||||||||    
T  18030944 tagcagttttctccccctaactttcacgaagttgcgattttggcctcctaa 18030994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 26601528 - 26601586
Alignment:
Q  154 tacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggccaatttt 212  Q
    |||||||| ||||||||||| ||| | |||| |||| ||||||||||||| ||||||||    
T  26601528 tacaaaaccaccccctaagttttgcatctgtgacagctttggtccccaagaccaatttt 26601586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 239257 - 239213
Alignment:
Q  87 tttaatagcagttttcgccccttaactttcacaaagttgcgattt 131  Q
    |||||||||||||||  |||| |||||||| ||||||||||||||    
T  239257 tttaatagcagttttaaccccctaactttctcaaagttgcgattt 239213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 5003394 - 5003335
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||| |||||||| |||||  ||||||||||||| |||||||||||||||| | |||||||    
T  5003394 taggattaatagcggtttta-ccccttaactttcccaaagttgcgattttagcttcctaag 5003335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 30349352 - 30349396
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||    
T  30349352 ttaatagcagttttagccctctaactttcccaaagttgcgatttt 30349396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 30349586 - 30349538
Alignment:
Q  169 taagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||| ||| ||||||| ||| || ||||||||||||||||||||||||    
T  30349586 taagttttgcaactgtagcagtttcggtccccaaggccaatttttggta 30349538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 23702121 - 23702170
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  23702121 taggcttaatagcagttttcgccccttaactttcacaaagttacgatttt 23702170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 17070910 - 17070954
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  17070910 ttaatagcagttttcgccccttaactttcacgaagttgcgatttt 17070954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 17577362 - 17577318
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  17577362 ttaatagcagttttcgccccttaactttcacgaagttgcgatttt 17577318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 37263357 - 37263405
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
T  37263357 aggtttaatagcagttttcgccccttaacttttacgaagttgcgatttt 37263405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 22192307 - 22192349
Alignment:
Q  90 aatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  22192307 aatagcagttttcgccccttaactttcacgaagttgcgatttt 22192349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 41602928 - 41602867
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    ||||| |||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||    
T  41602928 ttaggcttaatagcagttttagccccctaagtttcaaaaagttgcgattttagcctcctaag 41602867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 29658017 - 29657965
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||||| || |||||||||  |||||||||||||    
T  29658017 ttttaggtttaatagcagttttcgctccctaactttcatcaagttgcgatttt 29657965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 39889767 - 39889819
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||| |||||    
T  39889767 ttttaggcttaatagcagttttcgcctcttaactttcacgaagttgcaatttt 39889819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 27545678 - 27545539
Alignment:
Q  76 tatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtct 175  Q
    |||||| | ||||||||||| ||||| ||||| ||||| |||| |||||||||||||  || ||||||         ||||||||| | ||||||||| |    
T  27545678 tatattattggtttaatagcggtttttgccccctaactatcacgaagttgcgattttggccccctaagaaaaaaa--ctacaaaactatcccctaagttt 27545581  T
Q  176 tgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    |  || |||| ||| ||||| |||||||||||||||||||||    
T  27545580 tacaattgtagcagttttggcccccaaggccaatttttggta 27545539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 37813165 - 37813209
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| ||||||||||||| || |||||||    
T  37813165 ttaatagcagttttcgccccctaactttcacaaatttacgatttt 37813209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 41487203 - 41487326
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaaactgtaac 187  Q
    ||||||||||||||||||||  || |||||| ||||||||||||| ||| ||||||         |||||||||  |||||||||| ||| ||||||| |    
T  41487203 ttaatagcagttttcgcccccgaattttcacgaagttgcgattttgaccccctaag-aaacaaaactacaaaaccgccccctaagttttgcaactgtagc 41487301  T
Q  188 agatttggtc-cccaaggccaattt 211  Q
    || ||||| | ||||||||||||||    
T  41487302 agttttggccgcccaaggccaattt 41487326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 41487527 - 41487475
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    ||||||||||||||||||||| ||||  |||||||  ||||||||||||||||    
T  41487527 tttaggtttaatagcagttttagccctctaacttttccaaagttgcgatttta 41487475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 23702445 - 23702390
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||| ||||| ||||||||  ||||||||||||||| || ||||||    
T  23702445 ttaatagcagttttagccccctaactttccaaaagttgcgattttagccccctaag 23702390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 25144257 - 25144206
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    ||||||||||||||| |||||||| | |||| ||||| ||||||||||||||    
T  25144257 ttaggtttaatagcaattttcgcctcctaacattcacgaagttgcgatttta 25144206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 20853373 - 20853435
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||||||||||||| ||| |||||    
T  20853373 ttttaggcttaatagcagttttagccccctaactttcttgaagttgcgattttgaccccctaa 20853435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 25896991 - 25897037
Alignment:
Q  86 gtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||| ||||| |||||||  |||||||||||||||    
T  25896991 gtttaatagcagttttagccccctaactttttcaaagttgcgatttt 25897037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 35213034 - 35213088
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||||| ||||||||||  ||||||| |||||||||||||||| ||| |||||    
T  35213034 ttaatagcggttttcgcccactaactttgacaaagttgcgattttgaccccctaa 35213088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 521753 - 521708
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    ||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  521753 ttaatagcagttttcaccccctaattttcacgaagttgcgatttta 521708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 28349623 - 28349574
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| ||||||| |||||| ||||| |||||||| |||||||||||||||    
T  28349623 taggcttaatagtagttttagccccctaactttcccaaagttgcgatttt 28349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 30539306 - 30539258
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||||||||| |||| ||||||||| |||||||||||||||    
T  30539306 taggcttaatagcagttttagccc-ttaactttcccaaagttgcgatttt 30539258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 33298641 - 33298600
Alignment:
Q  91 atagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||| | |||||||||| |||||||||||||    
T  33298641 atagcagttttcgcctcctaactttcacgaagttgcgatttt 33298600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 45456965 - 45457013
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||| ||||||||||||| ||||||| || |||||| ||||||    
T  45456965 aggtttaataacagttttcgccccctaacttttacgaagttgtgatttt 45457013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 45515928 - 45515980
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| ||||| |||||||| ||||||||| |||  |||||||||||||||    
T  45515928 ttttaggcttaattgcagttttagccccttaattttttcaaagttgcgatttt 45515980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 46082 - 46134
Alignment:
Q  91 atagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  46082 atagcagttttcgccccctaactttcacgaagttgcgattttaaccccctaag 46134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 25085394 - 25085446
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  25085394 ttttaggcttaatagcagttttcgccccctaactttcataaagttgcgatttt 25085446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 46912189 - 46912237
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  46912189 aggtttaatagcagttttcgctccttaactttcacgaagttgcgatttt 46912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 39642203 - 39642247
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  39642203 ttaatagcagttttcgccccctaactttcacgaagttgcgatttt 39642247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 25486529 - 25486478
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    ||||| |||||||||||||| ||||| |||||||||| ||||||||||||||    
T  25486529 ttaggcttaatagcagtttttgccccctaactttcacgaagttgcgatttta 25486478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 41997637 - 41997687
Alignment:
Q  82 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  41997637 ttaggtttaatagcaatttttgccccctaattttcacaaagttgcgatttt 41997687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 45739247 - 45739190
Alignment:
Q  85 ggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||||||| |||||||| || ||||||||||| |||||||||||||  ||||||||    
T  45739247 ggtttaatagtagttttcgtcctttaactttcacgaagttgcgattttggcctcctaa 45739190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 5287885 - 5287841
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||    
T  5287885 ttaatagcagttttaaccccttaactttctcaaagttgcgatttt 5287841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 7060622 - 7060674
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||||| | |||||||| |  |||||||||||||    
T  7060622 ttttaggtttaatagcagttttcgctctttaacttttatgaagttgcgatttt 7060674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 7579662 - 7579710
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||  |||||||||||||  ||||||||||||||    
T  7579662 aggtttaatagcagttttaaccccttaactttccaaaagttgcgatttt 7579710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 18632320 - 18632364
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||    
T  18632320 ttaattgcagttttagtcccttaactttcacaaagttgcgatttt 18632364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 18632650 - 18632606
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  18632650 ttaatagcagttttcgccccctaacttttacgaagttgcgatttt 18632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 50401686 - 50401638
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||||||||||| |||  | |||||||||||||    
T  50401686 aggtttaatagcagttttcgccccttaattttttcgaagttgcgatttt 50401638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 16545877 - 16545819
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||||||  |||||||||  ||||||||| || |||||||||||||| ||||||||    
T  16545877 aggtttaataatagttttcgcttcttaacttttacgaagttgcgattttagcctcctaa 16545819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 51251439 - 51251382
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    ||||||| |||||||||| |||||| |||||| || ||||||||||||| |||||||||    
T  51251439 aggtttagtagcagtttttgcccct-aacttttacgaagttgcgattttgacctcctaa 51251382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 1853444 - 1853493
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||   |||| |||||| |||||||||||||    
T  1853444 taggtttaatagcagttttcgcgttttaattttcacgaagttgcgatttt 1853493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 14190540 - 14190589
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||| ||||||||  | || ||||||||||||||||||||||||    
T  14190540 taggtttaattgcagttttaacaccctaactttcacaaagttgcgatttt 14190589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 23220881 - 23220828
Alignment:
Q  79 attttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||| || ||||||||||||||||| ||||||| || ||||| |||||||    
T  23220881 attttaggcttgatagcagttttcgccccctaacttttacgaagttacgatttt 23220828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 1096470 - 1096514
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||| ||||||| |||||||||||||  |||||||||||||||    
T  1096470 ttaataacagttttagccccttaacttttccaaagttgcgatttt 1096514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 3377504 - 3377548
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||    
T  3377504 ttaatagcagttttagccccctaacttttccaaagttgcgatttt 3377548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 3377822 - 3377778
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||||    
T  3377822 ttaatagcagttttagccccctaactttcccaaagttgtgatttt 3377778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 11050480 - 11050433
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| ||| |||||||||| ||||||| |||||    
T  11050480 aggtttaatagcagttttcgtccc-taactttcacgaagttgcaatttt 11050433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 14978800 - 14978844
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||    
T  14978800 ttaatagcagttttagccccctaacttttccaaagttgcgatttt 14978844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 16874509 - 16874553
Alignment:
Q  86 gtttaatagcagttttcgccccttaactttcacaaagttgcgatt 130  Q
    ||||||||||| |||||||||| ||||||| || |||||||||||    
T  16874509 gtttaatagcaattttcgccccctaacttttacgaagttgcgatt 16874553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 17692725 - 17692785
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||||||||| ||||  |||| |||||||| |||||||| ||||||| || ||||||    
T  17692725 taggtttaatagcaattttaaccccctaactttctcaaagttgtgattttagccccctaag 17692785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 23891663 - 23891707
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||| || |||||||||| |||||| ||||||    
T  23891663 ttaatagcagttttcgctccctaactttcacgaagttgtgatttt 23891707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 32295019 - 32295083
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||||||| ||| ||||||| ||| || |||| ||| ||||| || ||||||||||||||||||    
T  32295019 ctacaaaaccacctcctaagttttgcaattgtagcagttttggcccacaaggccaatttttggta 32295083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 48319716 - 48319673
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||    
T  48319716 ttaatagcagttttcgtccct-aactttcacaaagttgctatttt 48319673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 14449268 - 14449320
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||| ||||||    
T  14449268 ttttaagtttaatagcagttttcgccccctaactttcacgaagttgagatttt 14449320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 16292586 - 16292534
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| || |||||||||| |||||||||| |||||||||||||    
T  16292586 ttttaggtttaataacaattttcgccccctaactttcacgaagttgcgatttt 16292534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 35393988 - 35393936
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| ||||||||||||||| |||| |||||||||| |||||||||||||    
T  35393988 ttttaggcttaatagcagttttcaccccctaactttcacgaagttgcgatttt 35393936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 1420862 - 1420811
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| |||||||    
T  1420862 tttaggcttaatagcagttttagccccttaactttcccaaagttacgatttt 1420811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 51362858 - 51362807
Alignment:
Q  81 tttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||    
T  51362858 tttaggtttaatagcagttttcgtcccctaacttttacaaagttgtgatttt 51362807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 2017107 - 2016980
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaagnnnnnnnnnctacaaaacaaccccctaagtcttgaa 179  Q
    ||||||| |||||||||||||| ||||| ||||||||  ||||||||||||||  |||| ||||         ||||||||| |  || ||||| ||| |    
T  2017107 ttttaggcttaatagcagttttagccccataactttcctaaagttgcgattttggcctcataagaaaaaaaaactacaaaacca-tccataagttttgca 2017009  T
Q  180 actgtaacagatttggtccccaaggccaa 208  Q
    |||||||||| ||||| ||||||||||||    
T  2017008 actgtaacagttttggcccccaaggccaa 2016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 4411541 - 4411492
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    |||||||||| ||||||||||||| ||| |||||| ||||||||||||||    
T  4411541 aggtttaataacagttttcgccccctaattttcacgaagttgcgatttta 4411492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 6614845 - 6614894
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| ||||||||| |||||| |||||||||||||| |||||||||||||    
T  6614845 taggcttaatagcatttttcgacccttaactttcacgaagttgcgatttt 6614894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 2181372 - 2181308
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    |||||||||  ||| |||||| ||| ||||||||||| ||||| |||||||| ||||||||||||    
T  2181372 ctacaaaactgccctctaagttttgcaactgtaacagttttggcccccaaggacaatttttggta 2181308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 12719450 - 12719498
Alignment:
Q  84 aggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||||||||||| ||||| ||| || |||||||    
T  12719450 aggtttaatagcagttttcgccccttaattttcataaatttacgatttt 12719498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 23759564 - 23759608
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||    
T  23759564 ttaatagtagttttcgccccctaactttcataaagttgcgatttt 23759608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 35383768 - 35383812
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||    
T  35383768 ttaatagcagttttcgccccctaactttcacgaagttgtgatttt 35383812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 43074619 - 43074663
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||    
T  43074619 ttaatagcaattttcgccccctaactttcacgaagttgcgatttt 43074663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 14016723 - 14016778
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaag 143  Q
    |||||||| ||||| ||||| |||||||| |||||||||||||||  |||||||||    
T  14016723 ttaatagcggttttagccccctaactttcccaaagttgcgattttggcctcctaag 14016778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 50769363 - 50769410
Alignment:
Q  85 ggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||  |||| |||||||| |||||||||||||||    
T  50769363 ggtttaatagcagttttatccccctaactttcccaaagttgcgatttt 50769410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 1420538 - 1420592
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgattttaacctcctaa 142  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||  ||||||||    
T  1420538 ttaatagcagttttagccccctaacttttccaaagttgcgattttggcctcctaa 1420592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 34771267 - 34771321
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaa 134  Q
    ||||||| |||||| ||||||||||||  |||||||||||||||| | |||||||    
T  34771267 ttttaggcttaataacagttttcgccctctaactttcacaaagttacaattttaa 34771321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 10059750 - 10059815
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtcccc-aaggccaatttttggta 217  Q
    |||||||||  |||||||||| ||| ||||||| ||| |||||||||| |||| ||||||||||||    
T  10059750 ctacaaaaccgccccctaagttttgcaactgtagcagttttggtcccccaaggtcaatttttggta 10059815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 44356712 - 44356664
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||||||||| |||||| ||||||| |||||||||||||||    
T  44356712 taggcttaatagcagttttagcccct-aactttctcaaagttgcgatttt 44356664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 51362771 - 51362722
Alignment:
Q  168 ctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    |||||| ||| ||||||| ||| ||||||||||||| |||||||||||||    
T  51362771 ctaagttttgcaactgtagcagttttggtccccaagaccaatttttggta 51362722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 6614912 - 6614975
Alignment:
Q  153 ctacaaaacaaccccctaagtcttgaaactgtaacagatttggtccccaaggccaatttttggta 217  Q
    ||||||||| | ||||||||| ||| ||||||| ||| ||||| |||||||| ||||||||||||    
T  6614912 ctacaaaaccatcccctaagttttgcaactgtagcagttttgg-ccccaaggtcaatttttggta 6614975  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 19909176 - 19909220
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||  |||| |||||||| |||||||||||||||    
T  19909176 ttaatagcagttttaaccccctaactttctcaaagttgcgatttt 19909220  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 21322702 - 21322754
Alignment:
Q  80 ttttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||| |||||||||| |||||||||  |||||||||  |||||||||||||    
T  21322702 ttttagatttaatagcaattttcgccctctaactttcatgaagttgcgatttt 21322754  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 21451462 - 21451506
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||| | |||||||| |||||||||||||||    
T  21451462 ttaatagcagttttagcctcctaactttctcaaagttgcgatttt 21451506  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 21957778 - 21957734
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||    
T  21957778 ttaatagcagttttagccccctaacttttccaaagttgcgatttt 21957734  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 35615478 - 35615435
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||    
T  35615478 ttaatagcagttttcacccct-aactttcacgaagttgcgatttt 35615435  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 43074877 - 43074833
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||| |||| ||||| |||||||| |||||||||||||||    
T  43074877 ttaatagcaattttagccccctaactttcccaaagttgcgatttt 43074833  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 49185869 - 49185826
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  49185869 ttaatagcagttttcaccccc-aactttcacaaagttgcgatttt 49185826  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 50769672 - 50769628
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| ||||||||||||||| ||||||| || |||||||||||||    
T  50769672 ttaaaagcagttttcgccccctaacttttacgaagttgcgatttt 50769628  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 51371774 - 51371730
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||| |||||||||||| |||||||| | |||||||||||||    
T  51371774 ttaatagtagttttcgccccctaactttctcgaagttgcgatttt 51371730  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 53312596 - 53312552
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||| |||||||| |||| |||||||||| |||||||||||||    
T  53312596 ttaataacagttttcaccccctaactttcacgaagttgcgatttt 53312552  T

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Target: scaffold1458 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 1469 - 1518
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||||||||| ||||| ||||||||||||||||| ||||||    
T  1469 taggcttaatagcagttttagccccctaactttcacaaagttgagatttt 1518  T

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Target: scaffold0515 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 3637 - 3686
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||||||||| ||||| |||||||| |||||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgatttt 3686  T

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Target: scaffold0417 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 9653 - 9604
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||||||||| || | |||||||||| |||||||||||||    
T  9653 taggtttaatagcagttttcacctcctaactttcacgaagttgcgatttt 9604  T

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Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 3637 - 3686
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||| |||||||||||||| ||||| |||||||| |||||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgatttt 3686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 19038 - 19086
Alignment:
Q  83 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattt 131  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||||    
T  19038 taggcttaatagtagttttcgccccttaactttcacgaagttgtgattt 19086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 6751 - 6697
Alignment:
Q  79 attttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 133  Q
    |||||||| |||||||||||||| ||||| ||| |||||  ||||||||||||||    
T  6751 attttaggcttaatagcagttttagccccctaagtttcaacaagttgcgatttta 6697  T

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Target: scaffold0372 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 127 - 171
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    |||||||||||||| ||| | |||||||| |||||||||||||||    
T  127 ttaatagcagttttagcctcctaactttctcaaagttgcgatttt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 3575 - 3619
Alignment:
Q  88 ttaatagcagttttcgccccttaactttcacaaagttgcgatttt 132  Q
    ||||||||||||||||||   |||||||||||||||| |||||||    
T  3575 ttaatagcagttttcgccttctaactttcacaaagttacgatttt 3619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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