View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_58 (Length: 227)
Name: NF11813_low_58
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 7399251 - 7399053
Alignment:
| Q |
15 |
agagatagtttaattccactaatagttaacaacctcgaagaagcttcatctatctataagaattatgttggtatattttggatgtcattacaaatcacta |
114 |
Q |
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| T |
7399251 |
agagatagtttaattccactaatagttaacaacctcgatgaagcttcatctatctataagaattatgttggtatattttggatgtcattacaaatcacta |
7399152 |
T |
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| Q |
115 |
acaatattagatttgacacagttaggtttatacagaaatcaagtttaattggtcttattaaaatttcaaaagcttaggt---atgacttgttatctatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7399151 |
acaatattagatttgacacagttaggtttatacaaaaatcaagtttaattgatcttattaaaatttcaaaagcttaggtatcatgacttgttatctatg |
7399053 |
T |
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