View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_low_7 (Length: 689)
Name: NF11813_low_7
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 274 - 676
Target Start/End: Original strand, 5777563 - 5777967
Alignment:
| Q |
274 |
ggggtgggggtcctcttgtatgtaaattacagaatcctcttcgattgtgatcatgttaattttactaatttctaagtaaatctcttcttggtttcactat |
373 |
Q |
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| T |
5777563 |
ggggtggtggtcctctcatatgtaaattacagaatcctcttcgattgtgatcatgttaattttactagtttctaagtaaatctcttcttggtttcactat |
5777662 |
T |
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| Q |
374 |
acaatataactccaataatggtgagtacatagccaagcattcctatcattgagacagggttttgaaatatcaaaattgagatcacaacagcaactgctcc |
473 |
Q |
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| T |
5777663 |
acaatataactccaataatggtgagaacatagccaagcattcctatcattgaaacagggttttgaaatatcaaaattgagatcaccacggcaactgctcc |
5777762 |
T |
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| Q |
474 |
ctttgcatttcccaacacctgaaaaaa--tgacaaaaataatcccattaaatgtctttttatctgcttaattaagcttcggtaagtgtttagtggccaac |
571 |
Q |
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| T |
5777763 |
ctttgcatttcccaacacctgaaaatatttgacaaaaataatcccattaaatgtctttttatctgcttaattaagcttccgtaagtgtttagtggccaac |
5777862 |
T |
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| Q |
572 |
acttatcagtgctgacaccgacacaacaccaatacatatggttacgtcgaatatttcacattctcatttatcaatgttgatgtgtcaatgttgtgtctga |
671 |
Q |
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| T |
5777863 |
acttatcagggccgacaccgacacaacaccaatacatgtggttacgtcgaatatttcacattctcatctatcaatgttgatgtgtcaatgttgtgtctga |
5777962 |
T |
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| Q |
672 |
tgtcc |
676 |
Q |
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| T |
5777963 |
tgtcc |
5777967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 5777232 - 5777348
Alignment:
| Q |
52 |
aatgttcttttttatgagagtacatagattttcacaaataaaaggttactagttcgcataatttatattgaaaatttcttctatgaaaaagcaattgcaa |
151 |
Q |
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| T |
5777232 |
aatgttctttcttttaagagtacatagattttcacaaataataggttacttgttcacatgatttatattgaaagtttcttctatgatgaagcaattgcaa |
5777331 |
T |
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| Q |
152 |
gtgatcaaagaaatcaa |
168 |
Q |
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| T |
5777332 |
gtgatcgaagaaatcaa |
5777348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 17013884 - 17013921
Alignment:
| Q |
208 |
gtcccttcagagacatccgataaaattgcaacgatata |
245 |
Q |
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| T |
17013884 |
gtcccttcagggacatccgataaaattggaacgatata |
17013921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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