View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_low_8 (Length: 688)

Name: NF11813_low_8
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_low_8
NF11813_low_8
[»] chr4 (5 HSPs)
chr4 (447-631)||(38508070-38508255)
chr4 (160-335)||(38507765-38507933)
chr4 (159-235)||(55290062-55290138)
chr4 (163-241)||(30161971-30162049)
chr4 (355-387)||(38507950-38507982)
[»] chr5 (3 HSPs)
chr5 (162-245)||(40640266-40640349)
chr5 (159-236)||(32361824-32361901)
chr5 (159-236)||(32379055-32379132)
[»] chr7 (2 HSPs)
chr7 (159-236)||(30034433-30034510)
chr7 (162-235)||(45868101-45868174)
[»] chr8 (6 HSPs)
chr8 (159-235)||(31544656-31544732)
chr8 (159-235)||(31559518-31559594)
chr8 (161-236)||(31547809-31547884)
chr8 (163-241)||(31877211-31877289)
chr8 (161-235)||(31556512-31556586)
chr8 (90-154)||(31877117-31877181)
[»] chr2 (6 HSPs)
chr2 (151-235)||(6493518-6493602)
chr2 (159-235)||(8328450-8328526)
chr2 (163-236)||(18229431-18229504)
chr2 (163-235)||(9596926-9596998)
chr2 (163-235)||(33994623-33994695)
chr2 (163-235)||(21281552-21281623)
[»] chr1 (2 HSPs)
chr1 (161-236)||(46613935-46614010)
chr1 (162-236)||(38624993-38625067)
[»] chr3 (2 HSPs)
chr3 (163-235)||(32053543-32053615)
chr3 (163-241)||(50683112-50683190)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 447 - 631
Target Start/End: Original strand, 38508070 - 38508255
Alignment:
Q  447 acataagaatgatagcttgtatgtgtgagccatcataaattt-gatccttggcaatagactgcttgagatcaaagtattaatgattggttactcgtgaag 545  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  38508070 acataagaatgatagcttgtatgtgtgagccatcataaattttgatccttgaaaatagactgcttgagatcaaagtattcatgattggttactcgtgaag 38508169  T
Q  546 gaacaacaccacaaccttccatttgaagtattgcaatgcaaatatatatcatcaaatcatatttaattattttttccaaaaattat 631  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38508170 gaacaacaccacaaccttccatttgaagtattgcaatacaaatatatatcatcaaatcatatttaattattttttccaaaaattat 38508255  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 160 - 335
Target Start/End: Original strand, 38507765 - 38507933
Alignment:
Q  160 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatggtaaaactttattacttt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| | ||||    
T  38507765 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct-gatgttaacactttacttcttt 38507863  T
Q  260 tagttgtagtataaaatggcaatagacaatcataatttaacatggaatagaaaataatcacctttgttttcaacag 335  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38507864 ------tagtataaaatggcaatagacaatcataatttaacatggaatagaaaataatcaccttcgttttcaacag 38507933  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 55290062 - 55290138
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290062 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 55290138  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 30162049 - 30161971
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30162049 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 30161971  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 38507950 - 38507982
Alignment:
Q  355 cgattgagcctgtcaccctcccactactatttt 387  Q
    ||||||||||||||||||||||||| |||||||    
T  38507950 cgattgagcctgtcaccctcccactgctatttt 38507982  T

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Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 40640266 - 40640349
Alignment:
Q  162 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatggtaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40640266 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatggtaa 40640349  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32361824 - 32361901
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361824 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32361901  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32379055 - 32379132
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379055 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32379132  T

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Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 30034433 - 30034510
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034433 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 30034510  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 45868101 - 45868174
Alignment:
Q  162 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868101 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 45868174  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 31544732 - 31544656
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544732 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31544656  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 31559594 - 31559518
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559594 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31559518  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 31547884 - 31547809
Alignment:
Q  161 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547884 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 31547809  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 31877211 - 31877289
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31877211 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 31877289  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 31556586 - 31556512
Alignment:
Q  161 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31556586 aatgcggtgagcgtggatcaaacacgcgaccttcagatcttcaatctgacgctctcccaactgagctatccccgc 31556512  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 31877117 - 31877181
Alignment:
Q  90 aaccaaatttattggcaatgcataagcaattattattccatatatacaggttttttaattaaaaa 154  Q
    |||||||||||  | ||||||||| | ||||||||| |||||||||||| |||| ||||||||||    
T  31877117 aaccaaatttaaagtcaatgcatatgtaattattataccatatatacagcttttataattaaaaa 31877181  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 6493602 - 6493518
Alignment:
Q  151 aaaatagtaaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493602 aaaattgttaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 6493518  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 8328450 - 8328526
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328450 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 8328526  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 18229504 - 18229431
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229504 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 18229431  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 9596998 - 9596926
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596998 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 9596926  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 33994623 - 33994695
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994623 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 33994695  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 21281552 - 21281623
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  21281552 tgcggtgagcatggatcaaacacgcgaccttcggatcttca-tctgaggctctcccaactgagctatccccgc 21281623  T

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Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 46614010 - 46613935
Alignment:
Q  161 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614010 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 46613935  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 38624993 - 38625067
Alignment:
Q  162 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38624993 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 38625067  T

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Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 32053543 - 32053615
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053543 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 32053615  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 50683112 - 50683190
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  50683112 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatcccagcttgatg 50683190  T

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