View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_low_9 (Length: 652)

Name: NF11813_low_9
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_low_9
NF11813_low_9
[»] chr4 (6 HSPs)
chr4 (411-595)||(38508070-38508255)
chr4 (128-299)||(38507769-38507933)
chr4 (128-205)||(30161971-30162048)
chr4 (128-199)||(55290067-55290138)
chr4 (1-94)||(38507637-38507728)
chr4 (319-351)||(38507950-38507982)
[»] chr5 (3 HSPs)
chr5 (128-209)||(40640268-40640349)
chr5 (128-200)||(32361829-32361901)
chr5 (128-200)||(32379060-32379132)
[»] chr8 (5 HSPs)
chr8 (128-205)||(31877212-31877289)
chr8 (128-200)||(31547809-31547881)
chr8 (128-199)||(31544656-31544727)
chr8 (128-199)||(31559518-31559589)
chr8 (128-199)||(31556512-31556583)
[»] chr7 (2 HSPs)
chr7 (128-200)||(30034438-30034510)
chr7 (128-199)||(45868103-45868174)
[»] chr2 (6 HSPs)
chr2 (128-200)||(18229431-18229503)
chr2 (128-199)||(6493518-6493589)
chr2 (128-199)||(8328455-8328526)
chr2 (128-199)||(9596926-9596997)
chr2 (128-199)||(33994624-33994695)
chr2 (128-199)||(21281553-21281623)
[»] chr1 (2 HSPs)
chr1 (128-200)||(38624995-38625067)
chr1 (128-200)||(46613935-46614007)
[»] chr3 (2 HSPs)
chr3 (128-199)||(32053544-32053615)
chr3 (128-205)||(50683113-50683190)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 411 - 595
Target Start/End: Original strand, 38508070 - 38508255
Alignment:
Q  411 acataagaatgatagcttgtatgtgtgagccatcataaattt-gatccttggcaatagactgcttgagatcaaagtattaatgattggttactcgtgaag 509  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  38508070 acataagaatgatagcttgtatgtgtgagccatcataaattttgatccttgaaaatagactgcttgagatcaaagtattcatgattggttactcgtgaag 38508169  T
Q  510 gaacaacaccacaaccttccatttgaagtattgcaatgcaaatatatatcatcaaatcatatttaattattttttccaaaaattat 595  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38508170 gaacaacaccacaaccttccatttgaagtattgcaatacaaatatatatcatcaaatcatatttaattattttttccaaaaattat 38508255  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 128 - 299
Target Start/End: Original strand, 38507769 - 38507933
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatggtaaaactttattacttttagt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| | ||||        
T  38507769 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct-gatgttaacactttacttcttt---- 38507863  T
Q  228 tgtagtataaaatggcaatagacaatcataatttaacatggaatagaaaataatcacctttgttttcaacag 299  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38507864 --tagtataaaatggcaatagacaatcataatttaacatggaatagaaaataatcaccttcgttttcaacag 38507933  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 30162048 - 30161971
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30162048 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 30161971  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 55290067 - 55290138
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290067 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 55290138  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 38507637 - 38507728
Alignment:
Q  1 agagaaaataaagtatagcaaattataatttacagnnnnnnnngtttcaagtttcaaccaatgtagtgcgatcatagcaaagcgattcatagtt 94  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38507637 agagaaaataaagtatagcaaattataatttacagaaaaaaaagtttcaagtttcaaccaatgtag--cgatcatagcaaagcgattcatagtt 38507728  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 38507950 - 38507982
Alignment:
Q  319 cgattgagcctgtcaccctcccactactatttt 351  Q
    ||||||||||||||||||||||||| |||||||    
T  38507950 cgattgagcctgtcaccctcccactgctatttt 38507982  T

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Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 40640268 - 40640349
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatggtaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40640268 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatggtaa 40640349  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 32361829 - 32361901
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361829 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32361901  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 32379060 - 32379132
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379060 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32379132  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 31877212 - 31877289
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31877212 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 31877289  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 31547881 - 31547809
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547881 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 31547809  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 31544727 - 31544656
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544727 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31544656  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 31559589 - 31559518
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559589 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31559518  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 31556583 - 31556512
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31556583 gcggtgagcgtggatcaaacacgcgaccttcagatcttcaatctgacgctctcccaactgagctatccccgc 31556512  T

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Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 30034438 - 30034510
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034438 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 30034510  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 45868103 - 45868174
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868103 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 45868174  T

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Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 18229503 - 18229431
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229503 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 18229431  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 6493589 - 6493518
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493589 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 6493518  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 8328455 - 8328526
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328455 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 8328526  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 9596997 - 9596926
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596997 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 9596926  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 33994624 - 33994695
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994624 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 33994695  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 21281553 - 21281623
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  21281553 gcggtgagcatggatcaaacacgcgaccttcggatcttca-tctgaggctctcccaactgagctatccccgc 21281623  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 38624995 - 38625067
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38624995 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 38625067  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 46614007 - 46613935
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614007 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 46613935  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 32053544 - 32053615
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053544 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 32053615  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 50683113 - 50683190
Alignment:
Q  128 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  50683113 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatcccagcttgatg 50683190  T

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