View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11814_high_1 (Length: 1358)

Name: NF11814_high_1
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11814_high_1
NF11814_high_1
[»] chr6 (20 HSPs)
chr6 (19-989)||(26890573-26891536)
chr6 (21-375)||(27713769-27714107)
chr6 (21-330)||(26853763-26854094)
chr6 (19-87)||(26890207-26890275)
chr6 (183-286)||(26631744-26631847)
chr6 (183-286)||(26737719-26737822)
chr6 (183-318)||(27422277-27422412)
chr6 (183-297)||(27651942-27652055)
chr6 (184-276)||(26966390-26966482)
chr6 (183-271)||(31289542-31289630)
chr6 (315-369)||(27651844-27651898)
chr6 (312-385)||(26641217-26641290)
chr6 (312-385)||(26747183-26747256)
chr6 (21-98)||(27702263-27702340)
chr6 (1072-1108)||(26891597-26891633)
chr6 (44-191)||(27652069-27652213)
chr6 (52-98)||(26828527-26828573)
chr6 (56-101)||(26631648-26631693)
chr6 (56-101)||(26737623-26737668)
chr6 (312-381)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (21-375)||(17837-18175)
[»] chr8 (4 HSPs)
chr8 (21-375)||(29269635-29270000)
chr8 (801-993)||(12072865-12073044)
chr8 (1072-1139)||(12073145-12073212)
chr8 (606-719)||(12072659-12072771)
[»] chr2 (4 HSPs)
chr2 (1163-1293)||(43148739-43148869)
chr2 (71-143)||(17989856-17989928)
chr2 (1190-1289)||(43149064-43149166)
chr2 (304-360)||(946412-946469)
[»] scaffold0003 (1 HSPs)
scaffold0003 (183-318)||(64951-65086)
[»] chr4 (8 HSPs)
chr4 (21-191)||(18692271-18692442)
chr4 (445-519)||(5078646-5078720)
chr4 (304-386)||(18682705-18682787)
chr4 (304-354)||(18650319-18650369)
chr4 (304-353)||(18718539-18718588)
chr4 (50-101)||(18674282-18674333)
chr4 (338-382)||(18692037-18692081)
chr4 (21-59)||(5083231-5083269)


Alignment Details
Target: chr6 (Bit Score: 830; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 19 - 989
Target Start/End: Original strand, 26890573 - 26891536
Alignment:
Q  19 ctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890573 ctaaagggcagtgagtaacggtatgctttgcagctcatttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaa 26890672  T
Q  119 aggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttgtgtcacagcaacaacaccgaatggctc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890673 aggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagag--aaccagatgaaggtcagaacttgtgtcacagcaacaacaccgaatggctc 26890770  T
Q  219 ttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaaaacatgtatgtatgatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26890771 ttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaacacatgtatgtatgatt 26890870  T
Q  319 aatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctttctggtatgatgatgtgaatgaatgcctttt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26890871 aatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctttctggtatgataatgtgaatgaatgcctttt 26890970  T
Q  419 caccctggacacacgaggctcgactgtttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcaca 518  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890971 caccctggacacaagaggctcgactgtttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcaca 26891070  T
Q  519 aatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaatatcataattgaatgtttatgttaagaaaaatactat 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  26891071 aatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaatatcataattgaatgtttgtgttaagaaaaatgctat 26891170  T
Q  619 ttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaacttccccaattcaaaaa 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  26891171 ttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtaaaaaaaatctgtacaactaatcaaaacttccccaattcaaaaa 26891270  T
Q  719 cctctcatcctgtttctcccgactgtaacctctgtaaatctgttacataagaagaagaatactcattactttcgttttgcgcttcctttcttattacgcc 818  Q
    ||||||||||||||| | || |||||||||||||||||||||||||||   ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  26891271 cctctcatcctgtttat-ccaactgtaacctctgtaaatctgttacat---aagaagaatactcatcacttttgttttgcgcttcctttcttattacgcc 26891366  T
Q  819 atcgtcgttcctttgcggtgtttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgccctcaccgttcctttgcttc 918  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||  |||||||||||| ||| |||||||||||| ||||| ||||||||||||    
T  26891367 atcgtcgttcctttgcggtttttggttgtcgccgttcaatttccgtattttgcagttgtcgttctttttccgtatttcgccgtcaccattcctttgcttc 26891466  T
Q  919 ctacatcaattttatatggaaattgggtaattttctctatcgaattaaattaattttctttgtaaattaaa 989  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  26891467 ctacatcaattttatatggaaattgggtaattttctctatcgaattaaattaa-ttactttgtaaattaaa 26891536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 27714107 - 27713769
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaag 120  Q
    ||||||||| |||||| | |||||||||||||||||||| || | | |||||||||||||| |||||||||| |||||||| | |||||||  || ||||    
T  27714107 aaagggcagcgagtaatgatatgctttgcagctcagttggagtgctttgagaatttcaatcttagtacacaatttggaatctacgtgttcaacaagaaag 27714008  T
Q  121 gaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttgtgtcacagcaacaacaccgaatggctctt 220  Q
    |||||| ||  ||||||| | || |||||||| || ||  || |||||                ||||||||||  |||||||||||| | ||| |||||    
T  27714007 gaagcatgagagaggatgcggtattcaccaattcttatagaaggagta----------------gaacttgtgtagcagcaacaacactgtatgtctctt 27713924  T
Q  221 gtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaaaacatgtatgtatgattaa 320  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||    
T  27713923 gtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatgtatgtatgattaa 27713824  T
Q  321 tttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 375  Q
    ||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  27713823 tttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 27713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 26853763 - 26854094
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaag 120  Q
    |||||||||||||||| | ||||||||||||| |||||| |||||| |||||| ||||||  ||||||||||||||||| |||  |||||| |||  |||    
T  26853763 aaagggcagtgagtaatgatatgctttgcagcccagttgtagagttttgagaaattcaattttagtacacaaattggaaccaacatgttcaagaatgaag 26853862  T
Q  121 gaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaact----------------------tgtgtcaca 198  Q
    ||||||||||||||||||||||| |||||||  || ||| |||||||||| |||||||| |||||||||                      |||||  ||    
T  26853863 gaagcacgaaggaggatgtgatattcaccaacccttatggaaagagtaaatcagatgaaagtcagaacttggaagtgtccgagaccgaacttgtgtagca 26853962  T
Q  199 gcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcag 298  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||  |||| |||||    
T  26853963 gcaacaacactgtatggctcttgtgattaataagttattcttgtgtaaaaacaattttctgccaagtcagttttctgagacagaacttgcgtaggagcag 26854062  T
Q  299 caaaacatgtatgtatgattaatttgctttta 330  Q
     || |||| |||||||||||||||| ||||||    
T  26854063 aaacacatatatgtatgattaatttcctttta 26854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 26890207 - 26890275
Alignment:
Q  19 ctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagta 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890207 ctaaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagta 26890275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 26631744 - 26631847
Alignment:
Q  183 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 282  Q
    ||||||||||||  | |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26631744 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacaga 26631843  T
Q  283 actt 286  Q
    ||||    
T  26631844 actt 26631847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 26737719 - 26737822
Alignment:
Q  183 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 282  Q
    ||||||||||||  | |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  26737719 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacaga 26737818  T
Q  283 actt 286  Q
    ||||    
T  26737819 actt 26737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 27422412 - 27422277
Alignment:
Q  183 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 282  Q
    ||||||||| ||  ||| |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  |||||    
T  27422412 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacaga 27422313  T
Q  283 acttatgtagcagcagcaaaacatgtatgtatgatt 318  Q
    |||| ||| |||||| ||| | ||||||||||||||    
T  27422312 acttgtgtcgcagcaacaacaaatgtatgtatgatt 27422277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 183 - 297
Target Start/End: Complemental strand, 27652055 - 27651942
Alignment:
Q  183 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 282  Q
    ||||||||| ||  |||||||||||| | ||  || |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  27652055 cagaacttgcgtagcagcaacaacactgtataacttttgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagtttt-tgagacaga 27651957  T
Q  283 acttatgtagcagca 297  Q
    |||| | ||||||||    
T  27651956 acttgtttagcagca 27651942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 26966390 - 26966482
Alignment:
Q  184 agaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctga 276  Q
    |||||||||||  ||||||||| || | |||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  26966390 agaacttgtgtagcagcaacaaaactgtatggctcttgagattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttttctga 26966482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 31289542 - 31289630
Alignment:
Q  183 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttt 271  Q
    |||||| |||||  ||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| |||||||  |||||||    
T  31289542 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 31289630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
Q  315 gattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagat 369  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  27651898 gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat 27651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 26641217 - 26641290
Alignment:
Q  312 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 385  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26641217 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26641290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 26747183 - 26747256
Alignment:
Q  312 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 385  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26747183 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26747256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 27702340 - 27702263
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattgga 98  Q
    ||||| |||||||||| | |||||||||||||||||||| || | | |||||||||| ||| |||||||||| |||||    
T  27702340 aaaggacagtgagtaatgatatgctttgcagctcagttggagtgctttgagaatttccatcttagtacacaatttgga 27702263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1072 - 1108
Target Start/End: Original strand, 26891597 - 26891633
Alignment:
Q  1072 agaggaacattcccttcaattcatgtttgtgctgaaa 1108  Q
    |||||||||||||||||||||||||||||||||||||    
T  26891597 agaggaacattcccttcaattcatgtttgtgctgaaa 26891633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 27652213 - 27652069
Alignment:
Q  44 ctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgata 143  Q
    |||||||||||||||  |||| | | |  ||||||||| ||||||||||||||||||| |  |||||| |||||   |||||||  | ||||||||||||    
T  27652213 ctttgcagctcagtttgagaggttttaagatttcaatcttagtacacaaattggaatccacatgttcaagaaaa---gaagcacagaagaggatgtgata 27652117  T
Q  144 atcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttg 191  Q
     ||||| || || ||  |||||| |||  |||||||| ||||||||||    
T  27652116 ttcacctatccttatagaaagagaaaagaagatgaagatcagaacttg 27652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 26828527 - 26828573
Alignment:
Q  52 ctcagttgaagagttatgagaatttcaatcgtagtacacaaattgga 98  Q
    ||||||||||||||| | |||||||||||| ||||| ||||||||||    
T  26828527 ctcagttgaagagttttcagaatttcaatcttagtatacaaattgga 26828573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 26631648 - 26631693
Alignment:
Q  56 gttgaagagttatgagaatttcaatcgtagtacacaaattggaatc 101  Q
    |||| |||||| |||||||||||||  |||||||||||||||||||    
T  26631648 gttgcagagttttgagaatttcaatattagtacacaaattggaatc 26631693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 26737623 - 26737668
Alignment:
Q  56 gttgaagagttatgagaatttcaatcgtagtacacaaattggaatc 101  Q
    |||| |||||| |||||||||||||  |||||||||||||||||||    
T  26737623 gttgcagagttttgagaatttcaatattagtacacaaattggaatc 26737668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 26828715 - 26828784
Alignment:
Q  312 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 381  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| |||| |||| ||||||    
T  26828715 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa 26828784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 134; Significance: 4e-69; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 17837 - 18175
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaag 120  Q
    ||||||||| |||||| | |||||||||||||||||||| || | | |||||||||||||| |||||||||| |||||||| | |||||||  || ||||    
T  17837 aaagggcagcgagtaatgatatgctttgcagctcagttggagtgctttgagaatttcaatcttagtacacaatttggaatctacgtgttcaacaagaaag 17936  T
Q  121 gaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttgtgtcacagcaacaacaccgaatggctctt 220  Q
    |||||| ||  ||||||| | || |||||||| || ||  || |||||                ||||||||||  |||||||||||| | ||| |||||    
T  17937 gaagcatgagagaggatgcggtattcaccaattcttatagaaggagta----------------gaacttgtgtagcagcaacaacactgtatgtctctt 18020  T
Q  221 gtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaaaacatgtatgtatgattaa 320  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||    
T  18021 gtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaacttgtgtagcagcaacaacatatgtatgtatgattaa 18120  T
Q  321 tttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 375  Q
    ||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  18121 tttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 18175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 29270000 - 29269635
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaag 120  Q
    |||||||||||||||| | |||||||||||||||||||| || | | || ||||||| ||| |||||||||| |||||||| | |||||||  || ||||    
T  29270000 aaagggcagtgagtaatgatatgctttgcagctcagttggagtgctttgtgaatttccatcttagtacacaatttggaatctacgtgttcaataagaaag 29269901  T
Q  121 gaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccaga-------------tgaaggtcagaacttgtgtcacagcaacaaca 207  Q
    |||||| ||  ||||||| | || |||||||| || ||  || ||||||| ||||             |||||  ||||||||||||  |||||||||||    
T  29269900 gaagcatgagagaggatgcggtattcaccaattcttatagaaggagtaaatcagaacttggaattttctgaag--cagaacttgtgtagcagcaacaaca 29269803  T
Q  208 ccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagcaaaacatg 307  Q
    | | |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||| |||||||||| ||| | |||    
T  29269802 ctgtatggctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagacagaacttgtgtagcagcaacaacatatg 29269703  T
Q  308 tatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 375  Q
    |||| ||||||||||||||||||| | ||||||||| |||| |||||||||||| ||| |||| ||||    
T  29269702 tatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca 29269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 801 - 993
Target Start/End: Original strand, 12072865 - 12073044
Alignment:
Q  801 ttcctttcttattacgccatcgtcgttcctttgcggtgtttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgccc 900  Q
    ||||||| ||||||||||  |||||||||||||| |||||| ||||||   |||||||||||||      | |||||||||||||||||||||||||||     
T  12072865 ttcctttgttattacgccggcgtcgttcctttgccgtgtttcgttgtcattgttcaattgccgt------ccgttgtcgttcctttgccgtatttcgcc- 12072957  T
Q  901 tcaccgttcctttgcttcctacatcaattttatatggaaattgggtaattttctctatcgaattaaattaattttctttgtaaattaaattga 993  Q
         |||||||||||| ||||||  |||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| |||||||||||||    
T  12072958 -----gttcctttgcttactacattgattttatatggaaattgggtaaatttctctatggaattcaatcaattttcttt-taaattaaattga 12073044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1072 - 1139
Target Start/End: Original strand, 12073145 - 12073212
Alignment:
Q  1072 agaggaacattcccttcaattcatgtttgtgctgaaaaacataatgaaattctatcaccaaagttaaa 1139  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  12073145 agaggaacattcccttcaattcatgtttgagctgaaaaacattatgaaattctatcaccaaagttaaa 12073212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 606 - 719
Target Start/End: Original strand, 12072659 - 12072771
Alignment:
Q  606 agaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaacttc 705  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||        |||| |||| |||| ||| ||||    
T  12072659 agaaaaatgctatttctcgcgacagtttccttcccgagagtgacccgaatgacatgtt-gattacgtgtaaaagacatctggacaaataataaaatcttc 12072757  T
Q  706 cccaattcaaaaac 719  Q
    ||||||||||||||    
T  12072758 cccaattcaaaaac 12072771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 1e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 1163 - 1293
Target Start/End: Original strand, 43148739 - 43148869
Alignment:
Q  1163 gaatctaacctttttatctaagttattttgtttattgtgtgaacctagcatatcttttatctggtgatctggtcttcctaattaccatgtgatttatctg 1262  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||  ||||| |||||||||||| | |||| |||| ||||||||||||||||    
T  43148739 gaatctaacctttttatcttagtcattttgtttattgtgtgaacctggcatcccttttttctggtgatctgattttccgaattgccatgtgatttatctg 43148838  T
Q  1263 cgtaaattagaaacattttgaacctctgcca 1293  Q
     ||||||||||||||||||| ||||||||||    
T  43148839 tgtaaattagaaacattttgcacctctgcca 43148869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 17989928 - 17989856
Alignment:
Q  71 gaatttcaatcgtagtacacaaattggaatcaatgtgttcaggaaaaaaggaagcacgaaggaggatgtgata 143  Q
    ||||| ||||| |||||||||||| |||||| |||||||||  || |||  ||||||||||||||||||||||    
T  17989928 gaattccaatcttagtacacaaatgggaatccatgtgttcaataagaaaacaagcacgaaggaggatgtgata 17989856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1190 - 1289
Target Start/End: Original strand, 43149064 - 43149166
Alignment:
Q  1190 ttgtttattgtgtgaacctagcatatcttttatctggtgatctggtcttcctaat---taccatgtgatttatctgcgtaaattagaaacattttgaacc 1286  Q
    ||||||||||||||||||| |  | |||||||||||||||||| || ||||||||   | ||||| |||||||||| ||||| || ||  ||||||||||    
T  43149064 ttgtttattgtgtgaacctggtctctcttttatctggtgatctagttttcctaattgctgccatgcgatttatctgtgtaaaataaaattattttgaacc 43149163  T
Q  1287 tct 1289  Q
    |||    
T  43149164 tct 43149166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 946469 - 946412
Alignment:
Q  304 catgtatgtatgattaatttgcttttaagag-tacaagagtttgtacatattgtgata 360  Q
    ||||||||| ||||||  ||||||||||||| | |||||||||||||||||| |||||    
T  946469 catgtatgtgtgattagattgcttttaagagatgcaagagtttgtacatattttgata 946412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 6e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 64951 - 65086
Alignment:
Q  183 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 282  Q
    ||||||||| ||  ||| |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  |||||    
T  64951 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacaga 65050  T
Q  283 acttatgtagcagcagcaaaacatgtatgtatgatt 318  Q
    |||| ||| |||||| ||| | ||||||||||||||    
T  65051 acttgtgtcgcagcaacaacaaatgtatgtatgatt 65086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 18692442 - 18692271
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaat-caatgtgttcaggaaaaaa 119  Q
    |||||||||||||||  | ||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||||| |||| || |||||||| ||| |||    
T  18692442 aaagggcagtgagtattgatatgctttgcacctcagttggagagttttgagaatttcaatcttagtagacaaattagaatccactgtgttcaagaagaaa 18692343  T
Q  120 ggaagcacgaaggaggatgtgataatcaccaatgctcatgtaaagagtaaaccagatgaaggtcagaacttg 191  Q
      ||||| | || ||||||||||| ||| |||| || ||  |||||| ||| |||||||||  |||||||||    
T  18692342 aaaagcatggagcaggatgtgatattcatcaatccttatagaaagagaaaatcagatgaagaacagaacttg 18692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 445 - 519
Target Start/End: Original strand, 5078646 - 5078720
Alignment:
Q  445 tttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaa 519  Q
    |||||||||||||||||||||| | |||||||||||||  | ||||||||||| |||||||||||||||||||||    
T  5078646 tttggtgtcccaattcattgacttctatggtgggaagacatctcaattgtaagtttttaggtgtaaatatcacaa 5078720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 304 - 386
Target Start/End: Complemental strand, 18682787 - 18682705
Alignment:
Q  304 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 386  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  18682787 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctct 18682705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 18650369 - 18650319
Alignment:
Q  304 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatatt 354  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  18650369 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt 18650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 18718588 - 18718539
Alignment:
Q  304 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatat 353  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  18718588 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat 18718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 18674333 - 18674282
Alignment:
Q  50 agctcagttgaagagttatgagaatttcaatcgtagtacacaaattggaatc 101  Q
    |||||||||| |||||| |||||||||||||| ||||| |||||||||||||    
T  18674333 agctcagttggagagttttgagaatttcaatcttagtagacaaattggaatc 18674282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
Q  338 aagagtttgtacatattgtgatactgacagatggttcatcacaat 382  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  18692081 aagagtttgtacatattttcataccgacagatggttcatcacaat 18692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 5083231 - 5083269
Alignment:
Q  21 aaagggcagtgagtaacggtatgctttgcagctcagttg 59  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  5083231 aaagggcagtgagtaatgatatgctttgcagctcagttg 5083269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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