View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_high_2 (Length: 760)
Name: NF11814_high_2
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 11 - 744
Target Start/End: Original strand, 28063789 - 28064522
Alignment:
| Q |
11 |
aagcagagaagaagcaattgaagaattgatagatgtggtaattttcatctaaaatcattaatttttcatctacaattgtttccatcaatcattttcacaa |
110 |
Q |
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| T |
28063789 |
aagcagagaagaagcaattgaagaattgatagatgtggtaattttcatctaaaatcattaatttttcatctacaattgtttccatcaatcattttcacaa |
28063888 |
T |
|
| Q |
111 |
aattt-aacaccataacgccgtgacattttaatgagtgtatattgatttataagaatgtcgctcctgatgaattttcaaattaatgaagtttaagaaaaa |
209 |
Q |
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| T |
28063889 |
aattttaacaccataatgccgtgacattttaatgagtgtatattgatttataagaatgtcgctcctgatgaattttcaaattaataaagtttaagaaaaa |
28063988 |
T |
|
| Q |
210 |
ctagatttatttgtgattttccagatagaaacaacaataccaccagaaaattttacaccaaggatagtagacaggactgaagactatcttagggtggagt |
309 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28063989 |
ctatatttatttgtgattttccagatagaaacaacaataccaccagaaaattttacaccaaggatagtagacaggactgaagactatcttagggtggagt |
28064088 |
T |
|
| Q |
310 |
accaaagcccaatcttgggggtatgtgcgtaatttaattctctcataatgaaatttaccttattatttataaatttatgctatcaagtattttaagactt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28064089 |
accaaagcccaatcttgggggtatgtgcgtaatttaattctctcataatgaaatttaccttattatttataaatttatgctaacaagtattttaagactt |
28064188 |
T |
|
| Q |
410 |
ttgttgggttataaagaaccaactttaacaannnnnnnagtattcaaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattg |
509 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28064189 |
ttgttgggttataaagaaccaactttaacaatttttttagtattcaaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattg |
28064288 |
T |
|
| Q |
510 |
ttgagtatcgatcagcatcaagggttgggaattttgattttgatgtgaatagaagaaggatcaaggtacaatctcattgtgacttatgtgtgtgtctact |
609 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28064289 |
ttgagtatcgatcagcagcaagggttgggaattttgattttgatgtgaatagaagaagaatcaaggtacaatctcattgtgacttatgtgtgtgtctaca |
28064388 |
T |
|
| Q |
610 |
gatcaagattgtctatagcctaagtacatagttgtagctatgtagtgatcctcgatcgttggataagatctgactatttgtattttaatttcattaaatc |
709 |
Q |
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| T |
28064389 |
gatcaagattgtctatagcctaagtacat-gttgtagctatgtagtgatcctcaatcgttggaaaagatcagactactcgtattttaatttcattaaatc |
28064487 |
T |
|
| Q |
710 |
aactttaacatatatattaaaatataaatcatatg |
744 |
Q |
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| T |
28064488 |
aactttaacatatatattaaaatataaatcatatg |
28064522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 455 - 577
Target Start/End: Complemental strand, 7968805 - 7968683
Alignment:
| Q |
455 |
aaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattgttgagtatcgatcagcatcaagggttgggaattttgattttgatg |
554 |
Q |
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||||||||||| || ||||||||||| ||||| |||| || ||||| |||||| || ||||||||||| || |||||| | || || ||||||||||||| |
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| T |
7968805 |
aaacagtttgtagacgatgttgagttttggttcccaccaggtaagggctcaatcgtggagtatcgatctgcgtcaaggttgggaaactttgattttgatg |
7968706 |
T |
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| Q |
555 |
tgaatagaagaaggatcaaggta |
577 |
Q |
| |
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||||||||| ||| || |||||| |
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| T |
7968705 |
tgaatagaaaaagaataaaggta |
7968683 |
T |
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