View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_high_3 (Length: 700)
Name: NF11814_high_3
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 2747573 - 2747036
Alignment:
| Q |
1 |
aagttggattatgtgacattaaggcgtggtttcattatggtaagatttgtatgttatgtatttgcaattatatatatgattgaaccatattattaatttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747573 |
aagttggattatgtgacattaaggcgtggtttcattatggtaagatatgtatgttatgtatttgcaattatatatatgattgaaccatattattaatttt |
2747474 |
T |
|
| Q |
101 |
gtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaagatgacttccaaaacgttgttggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747473 |
gtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaagatgacttccaaaacgttgttggta |
2747374 |
T |
|
| Q |
201 |
ttaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagcaatataataagtaggccaaattttctttgtgcaacttatatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2747373 |
ttaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagca--ataataagtaggccaaattttctttgtgcaacttatatt |
2747276 |
T |
|
| Q |
301 |
gtattgttgttgattctctcttgtcactaattcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaat |
400 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2747275 |
gtaatgttgttgattctctcttgtcactaactcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttatgttgcttaat |
2747176 |
T |
|
| Q |
401 |
atcaatggtatgatacaaagacttggaacaatagaagtcac-attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggca |
499 |
Q |
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| T |
2747175 |
atcaatggtatgatacaaagacttggaacaatagaagtcacaattatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggca |
2747076 |
T |
|
| Q |
500 |
cacatacttttgggttgctttcattcctgtcattgtaagt |
539 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2747075 |
cacatacttttgggttgctttcattcctgtcattgtaagt |
2747036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 2755622 - 2755223
Alignment:
| Q |
1 |
aagttggattatgtgacattaaggcgtggtttcattatggtaagatttgtatgttatgtat-ttgcaattat-atatatgattgaaccatattattaatt |
98 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |||||||||| ||| ||| |||| ||||| ||||||||||||| ||||||||||||| |
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| T |
2755622 |
aagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgca-tatcttgccattattatatatgattgaatcatattattaatt |
2755524 |
T |
|
| Q |
99 |
ttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaagatgacttccaaaacgttgttgg |
198 |
Q |
| |
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||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||| | || ||||| || |
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| T |
2755523 |
ctgtttat-tgttttagactcattgtaggggaaatccgaagtttaattttcacaagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcgg |
2755425 |
T |
|
| Q |
199 |
tattaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagcaatataataagtaggccaaattttctttgtgcaacttata |
298 |
Q |
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|
||||||||||| | | | ||||||||||| || | ||||||||||| | ||| || | ||||||||||||||||| || | |||| |
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| T |
2755424 |
tattaggtatgcgcttctatcaagtttctatatttactacaatcttcatcagt-------aatttatt-----ggccaaattttctttgttcagcctata |
2755337 |
T |
|
| Q |
299 |
ttgtattgttgttgattctctcttgtcactaattcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgctta |
398 |
Q |
| |
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|||| ||| | ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755336 |
gtgtaaagttatgtattctttgttgtcattaattcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgctta |
2755237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 426 - 539
Target Start/End: Complemental strand, 2754946 - 2754835
Alignment:
| Q |
426 |
gaacaatagaagtcac-attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcatt |
524 |
Q |
| |
|
|||||||||||||||| |||||| ||| || |||||||||||||||||| |||| || |||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
2754946 |
gaacaatagaagtcacaattatgcaattttc---caatcaaaattaagatttctgttcatggtttcaggttggcacacatatttttggattgctttcatt |
2754850 |
T |
|
| Q |
525 |
cctgtcattgtaagt |
539 |
Q |
| |
|
||||||||||||||| |
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| T |
2754849 |
cctgtcattgtaagt |
2754835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 589 - 670
Target Start/End: Complemental strand, 2747017 - 2746934
Alignment:
| Q |
589 |
tgctttaaatagaataggtcatagatctttatcgaacgacctgaactagtctaa--tatgtgcatgcatataaatgtaaatttt |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
2747017 |
tgctttaaatagaataggtcatagatctttgtcgaaccacctgaactattataatctatgtgcatgcatataaatgtaaatttt |
2746934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 55322485 - 55322556
Alignment:
| Q |
341 |
tattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatatcaatggtatg |
412 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||| || |||||| | ||||||||||||||| |
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| T |
55322485 |
tattttcatggttgcagttggtatctttggctctttgtggtcatcttcttgttgttaaatatcaatggtatg |
55322556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 27383629 - 27383556
Alignment:
| Q |
466 |
aattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
539 |
Q |
| |
|
||||||||| | ||| ||||||| ||| |||||||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
27383629 |
aattaagatgtttgtgtattgttccagattggcacacatatttttggtttgctttcattcatgtcattgtaagt |
27383556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 55322259 - 55322305
Alignment:
| Q |
134 |
ccaaagtttaattttcacaagtacatgatccgtgcacttgaagatga |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
55322259 |
ccaaagtttaattttcacaagtacatgattcgtgcccttgaagatga |
55322305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 55323178 - 55323230
Alignment:
| Q |
487 |
tttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
539 |
Q |
| |
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||||||||||||| ||||| || ||| |||||||| ||||||| ||||||||| |
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|
| T |
55323178 |
tttcaggttggcatacatatttctggattgctttcgttcctgttattgtaagt |
55323230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 2372888 - 2372741
Alignment:
| Q |
1 |
aagttggattatgtgacattaaggcgtggtttcattatggtaagatttgtatgtt-atgtatttgcaattatatatatgattgaaccatattattaattt |
99 |
Q |
| |
|
|||||||| ||| || ||||||||| ||||||||||| |||||||||| ||| || | || |||| ||| ||| |||||| |||||||||||| |
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|
| T |
2372888 |
aagttggactatatggcattaaggcttggtttcattaaggtaagattttagtgtgcatatcttgccaatattatctattattgaatcatattattaatga |
2372789 |
T |
|
| Q |
100 |
tgtttttctattttagactcattgtaggggaaatccaaagtttaattttca |
150 |
Q |
| |
|
|| || ||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
2372788 |
tgattctctatattagactcattgtaggg---attcaaagtttaattttca |
2372741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 539
Target Start/End: Original strand, 1094688 - 1094745
Alignment:
| Q |
482 |
tattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
539 |
Q |
| |
|
||||||| ||| ||||||| |||| |||||| |||| ||||||| ||||||||||||| |
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|
| T |
1094688 |
tattgttccagattggcacgcatatttttggtttgcattcattcatgtcattgtaagt |
1094745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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