View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_high_37 (Length: 239)
Name: NF11814_high_37
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_high_37 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 231372 - 231150
Alignment:
| Q |
1 |
aatgtcattattcaattcgccaagttagcgagtttgtagaaaccacaaatccaagccagtcaaaatcgaattgtcaccgaaatggattggccaccgcaac |
100 |
Q |
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| T |
231372 |
aatgtcattattcaactcgccaagttagcgagtttgtagaaaccacaaatccaagccagtcaaaatcgaattgtcatcgaaatggattggccaccgcaac |
231273 |
T |
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| Q |
101 |
tcggagttatggatctgccacttagtttagtgtcggcggagttgaaaaggatgacgtaaaaaagtatgagtggcaaccaacggtgaaggagtggcaggtg |
200 |
Q |
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| T |
231272 |
tcagagttatggatctgccacttagtttagtgtcggcagagttgaaaaggatgacgtaaaagagtatgagtggcaaccaatggtgaagaagtggcaggtg |
231173 |
T |
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| Q |
201 |
ttggatggaaaaattgcatgttg |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
231172 |
ttggatggaaaaattgcacgttg |
231150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14586002 - 14586224
Alignment:
| Q |
1 |
aatgtcattattcaattcgccaagttagcgagtttgtagaaaccacaaatccaagccagtcaaaatcgaattgtcaccgaaatggattggccaccgcaac |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14586002 |
aatgtcattattcaactcgccaagttagcgagtttgtagaaaccacaaatccaagccagtcaaaatcgaattgtcatcgaaatggattggccaccgcaac |
14586101 |
T |
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| Q |
101 |
tcggagttatggatctgccacttagtttagtgtcggcggagttgaaaaggatgacgtaaaaaagtatgagtggcaaccaacggtgaaggagtggcaggtg |
200 |
Q |
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| T |
14586102 |
tcagagttatggatctgccacttagtttagtgtcggcagagttgaaaaggatgacgtaaaagagtatgagtggcaaccaatggtgaagaagtggcaggtg |
14586201 |
T |
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| Q |
201 |
ttggatggaaaaattgcatgttg |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
14586202 |
ttggatggaaaaattgcacgttg |
14586224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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