View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_high_4 (Length: 569)
Name: NF11814_high_4
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 49686643 - 49686094
Alignment:
| Q |
19 |
taaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttggaccgctcatttttaatgtttgtaacttgaa- |
117 |
Q |
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| T |
49686643 |
taaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttgggccgctcatttttaatgtttgtaacttgaaa |
49686544 |
T |
|
| Q |
118 |
---------tcctttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcacaaccttgaattgccaaatgcaccacagtttgggaattcaac |
208 |
Q |
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| T |
49686543 |
gtgttttcctcctttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcacaaccttgaattgccaa-tgcaccacagtttgggaattcaac |
49686445 |
T |
|
| Q |
209 |
tgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaagacaagtagc |
308 |
Q |
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| T |
49686444 |
tgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaagacaagtagc |
49686345 |
T |
|
| Q |
309 |
ggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaaca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686344 |
agtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaaca |
49686245 |
T |
|
| Q |
409 |
taaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgatttt |
508 |
Q |
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| T |
49686244 |
taaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgatttt |
49686145 |
T |
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| Q |
509 |
ctatcatttatttgttttgaaattgaaactcactttttgctaaattctctg |
559 |
Q |
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| T |
49686144 |
ctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctg |
49686094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 121 - 483
Target Start/End: Complemental strand, 49690791 - 49690421
Alignment:
| Q |
121 |
tttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcacaaccttgaattgccaaatgcaccacagtttgggaattcaactgtggtaaaagg |
220 |
Q |
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| T |
49690791 |
tttggttaactggacatacttcatagcagttttgttgagattatcacaaccttgaattgccaa-tgcaccacagcttgggaattcaactgttgtaaaagg |
49690693 |
T |
|
| Q |
221 |
gtagccaaccaatccaagatttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtc |
320 |
Q |
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||| || || ||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
49690692 |
gtatttaaaaaacccaagatttccacaaccaaatgagtctggacaatcaccactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtc |
49690593 |
T |
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| Q |
321 |
aaatgagagaacaaaag---------atgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataa |
411 |
Q |
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||||||||||||||||| ||||| ||| ||||| |||||| | ||| |||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
49690592 |
aaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataa |
49690494 |
T |
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| Q |
412 |
atatatcctttgaagccaattgacacgctatagttgacttggaaaat---tactacacaagtcatgtgaatttgt |
483 |
Q |
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| T |
49690493 |
atatattctttgaagcaaattgacacgc--tagttgacttggaaaatgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 118 - 338
Target Start/End: Complemental strand, 49679159 - 49678948
Alignment:
| Q |
118 |
tcctttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcacaaccttgaattgccaaatgcaccacagtttgggaattcaactgtggtaaa |
217 |
Q |
| |
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||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||| ||||| |
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| T |
49679159 |
tcctttggttaactggacgtgcttcatagcagttttgttgagattatcacaaccttgaattgccaa-tgtaccacagcttgggaattcaactgttgtaaa |
49679061 |
T |
|
| Q |
218 |
agggtagccaaccaatccaagatttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaagacaagtagcggtaacaca |
317 |
Q |
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| T |
49679060 |
agggtatttaatcaat--------tccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacaca |
49678969 |
T |
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| Q |
318 |
gtcaaatgagagaacaaaaga |
338 |
Q |
| |
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| T |
49678968 |
attaaatgagagaacaaaaga |
49678948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 49690904 - 49690842
Alignment:
| Q |
24 |
gcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttg |
86 |
Q |
| |
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||||| ||||||||||||| |||||||||||||| ||| | |||| |||||||||||||||| |
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| T |
49690904 |
gcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagtgttg |
49690842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 561
Target Start/End: Complemental strand, 49690378 - 49690330
Alignment:
| Q |
513 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgct |
561 |
Q |
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| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgct |
49690330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 49679269 - 49679207
Alignment:
| Q |
24 |
gcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttg |
86 |
Q |
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||||| |||||||| |||| |||||||||||||| ||| | |||| |||||||||||||||| |
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| T |
49679269 |
gcctcacaagcattcttctccaaaagcttggtgatattggggtcaataatggaaatagtgttg |
49679207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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