View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_high_5 (Length: 569)
Name: NF11814_high_5
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 4960607 - 4961149
Alignment:
| Q |
1 |
agaccattacacattttctagagaattagagagataatcacaaatttataagtaacacacagtgaggttccaaagatgaaaagcaaacaaaatgcatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4960607 |
agaccattacacattttctagagaattagagagataatcacaaatttataagtaacacacagtgaggttccaaagatgaaaagcaaacaaaatgcattgc |
4960706 |
T |
|
| Q |
101 |
atccaagacattggaaacactcccaaaatgtgtgatacagcgtgttttttaagggaaagaagggttttggggtaacacattttattcaattgaaatccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4960707 |
atccaagacattggaaacactcccaaaatgtg--atacaacgtgttttttaagggaaagaagggttttggggtaacacattttattcaattgaaatccaa |
4960804 |
T |
|
| Q |
201 |
agttttttcttgttctaagtgctacactgcaacctttagaaattaaatatccagcaaatcttatccaccacaccaacttgactctcggataaataaactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4960805 |
agttttttcttgttctaagtgctacactgcaacctttagaaattaaatatccagcaaatcttatccaccac--caacttgactctcggataaataaactc |
4960902 |
T |
|
| Q |
301 |
aaaaataggtagttaaactgtttgaaacgcagaagaaaccctaaaactcaaatttggattttctccaagatctcatgcaaataaacgtagtagaaaccct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4960903 |
aaaaataggtagttaaactgtttgaaacgcagaagaaaccctaaaactcaaatttggattttctccaagatctcatgcaaataaacgtagaagaaaccct |
4961002 |
T |
|
| Q |
401 |
aaaatttaaatttccattgttgttcactccaaatttcag-nnnnnnnnnnnnnnnngggatcatatgatatttttatacatcaaaatatcaagtgaaaat |
499 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4961003 |
aaaatttaaatttccattgttgttcgctccaaatttcagtttttttttttttttttgggatcatatgttatttttatacatcaaaatatcaagtgaaaat |
4961102 |
T |
|
| Q |
500 |
taaaaacatatgatattttgatagaacgatcacgattgtgctctatt |
546 |
Q |
| |
|
| |||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4961103 |
tggaaacatatgatattttaatagaacgaccacgattgtgctctatt |
4961149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University