View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_10 (Length: 379)
Name: NF11814_low_10
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 50240915 - 50240565
Alignment:
| Q |
18 |
attaatggatcaattacttacctcctcttctcaatgaagtagttgttgaaaaatgccagcctcctagtttgcaggtccttgcacttgttaaggtagcctc |
117 |
Q |
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| T |
50240915 |
attaatggatcaattacttacctcctcttctcaatgaagtagttgttgaaaaatgccagcctcctagtttgcaggtccttgcacttgttaaggtagcctc |
50240816 |
T |
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| Q |
118 |
tcaaaaatggcctaagcaatggtataaaatctccataattatattcaaaactctgtgccaaacggcttctctcagagttaaaccttgtagcctgaataaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240815 |
tcaaaaatggcctaagcaatggtataaaatctccataattatattcaaaactctgtgccaaacggcttctctcagagttaaaccttgtagcctgaataaa |
50240716 |
T |
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| Q |
218 |
caaaggatcttcttgagactcaaatttggcatcaaacatcatcctatacatgatattatacagcatcaactgaagacgttttctgataacaatgccttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240715 |
caaaggatcttcttgagactcaaatttggcatcaaacatcatcctatacatgatattatacagcatcaactgaagacgttttctgataacaatgccttca |
50240616 |
T |
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| Q |
318 |
cttttaacaatctcattagcctttaggtcttgaattaccaaatccatctct |
368 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50240615 |
cttttaacaatctcattagcctttaggtcttgaactaccaaatccatctct |
50240565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 32083641 - 32083682
Alignment:
| Q |
248 |
atcaaacatcatcctatacatgatattatacagcatcaactg |
289 |
Q |
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||||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
32083641 |
atcaaacataatcctatacataatattatacatcatcaactg |
32083682 |
T |
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