View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_11 (Length: 371)
Name: NF11814_low_11
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 44291758 - 44291409
Alignment:
| Q |
15 |
aacattatgatcataattttcaattcttttaattacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggc |
114 |
Q |
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| T |
44291758 |
aacattatgatcataattttcaattattttaattacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggt |
44291659 |
T |
|
| Q |
115 |
gcaactcctgaaacacttactccccttacaggtaatttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44291658 |
gcaactcctgaaacacttactccccttacaggtaatttataaattgcatcaaaatgtggttgtacttctgtcacattctttgcggatgcaaccacaacct |
44291559 |
T |
|
| Q |
215 |
agaacaaataataagcttcttaatgttggatatgcacaaaaaggactaaaatatatttttaatccctataaaattgagattttccaagtttagttaataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44291558 |
agaacaaataataagcttcttaatgttggatatgcacaaaaaggactaaaatatatttttaatccctataaaattgagattttccaagtttagttaataa |
44291459 |
T |
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| Q |
315 |
gcagattgattagtacgtaggaattacaatcaagtcatcttgaatctctg |
364 |
Q |
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| T |
44291458 |
gcagattgattagtacgtaggaattacaatcaagtcatcttgaatctctg |
44291409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 232
Target Start/End: Original strand, 32164424 - 32164609
Alignment:
| Q |
47 |
ttacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacagg |
146 |
Q |
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| T |
32164424 |
ttacctcattgattccaaattttggggcgaagaatcgactgtagaagtcaaatccagactctggaggagcaatcccggtaacaattaatccccttccagg |
32164523 |
T |
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| Q |
147 |
taatttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacctagaacaaataataagctt |
232 |
Q |
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| T |
32164524 |
taatttagcaattgcatccagttgtggctgtatttctgtgacattttttccagatgcgaccacaacctagaagaaataataagctt |
32164609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 27321473 - 27321609
Alignment:
| Q |
47 |
ttacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacagg |
146 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||| |
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| T |
27321473 |
ttacctcattgattccaaattttggggagaagaatcgactgtagaagtcaaatccggactcaggaggcgcaatccctgtaacacttactccccttccaga |
27321572 |
T |
|
| Q |
147 |
taatttataaattgcatcaaaatgtggttgtacttct |
183 |
Q |
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| T |
27321573 |
taatttagctagtgcatcaaattgtggttgtacttct |
27321609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 27262415 - 27262554
Alignment:
| Q |
44 |
taattacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttac |
143 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||| | |
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| T |
27262415 |
taattacctcattgattccaaattttggggagaagaatcgactgtagaagtcaaatcccgaatcaggaggcacaatccctgtaacacttactccccttcc |
27262514 |
T |
|
| Q |
144 |
aggtaatttataaattgcatcaaaatgtggttgtacttct |
183 |
Q |
| |
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|| ||||||| | ||||||||||||||||||||||||| |
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| T |
27262515 |
agataatttagctagtgcatcaaaatgtggttgtacttct |
27262554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 27347422 - 27347558
Alignment:
| Q |
47 |
ttacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacagg |
146 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||| ||| |
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| T |
27347422 |
ttacctcgttgattccaaactttggggagaagaatcgactgtagaagtcaaatcctgactcaggaggtgcaatccctgtaacacttactccccttccaga |
27347521 |
T |
|
| Q |
147 |
taatttataaattgcatcaaaatgtggttgtacttct |
183 |
Q |
| |
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||||||| | ||||||||| |||| |||||||||| |
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| T |
27347522 |
taatttagctagtgcatcaaattgtgcttgtacttct |
27347558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 32156660 - 32156863
Alignment:
| Q |
49 |
acctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacaggta |
148 |
Q |
| |
|
|||||||| | ||||| |||||| ||||| ||||| |||||||| |||||||| ||||| ||||| || | |||| |||| ||| |||||| |||| |
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| T |
32156660 |
acctcatttactccaaattttgggcagaaaaatcgactgtagaaatcaaatcccgactctggaggagcgatccctgtaacaattatcccccttccaggag |
32156759 |
T |
|
| Q |
149 |
atttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacctagaacaaataataagcttcttaatgttggatatg |
248 |
Q |
| |
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|||| |||||||||||| |||||||| |||||| | ||||| ||| | |||| || ||||||||| | |||||||||||||| ||||||| ||||| |
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| T |
32156760 |
attttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaacaacctaggagaaataataagcttcataatgttctatatg |
32156859 |
T |
|
| Q |
249 |
caca |
252 |
Q |
| |
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|||| |
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| T |
32156860 |
caca |
32156863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 27360432 - 27360250
Alignment:
| Q |
46 |
attacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacag |
145 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||| |||||||| ||||||| |||||||| ||||| ||||||||||||||| | |
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| T |
27360432 |
attacctcattgactccaatttttggggcaaagaatcgactgtagaaatcaaatcctgactcagaaggcgcaatccctgatacacttactccccttctgg |
27360333 |
T |
|
| Q |
146 |
gtaatttataaattgcatcaaaatgtggttgtacttctgtcacattatttgcggatgcaaccacaacctagaacaaataataa |
228 |
Q |
| |
|
||| | | ||||||||||||| ||||| |||| | || | ||||| ||| | |||| ||||||||||| | ||||||||| |
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|
| T |
27360332 |
gtattctgcaaattgcatcaaattgtggatgtattgctttgacattctttccagatgtgaccacaacctaagagaaataataa |
27360250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 32167096 - 32167239
Alignment:
| Q |
48 |
tacctcattgattccaatttttggacagaagaatcggctgtagaagtcaaatccagactcaggaggcgcaactcctgaaacacttactccccttacaggt |
147 |
Q |
| |
|
|||||||||||||||| ||| || ||||| |||| ||||||||||||||||| ||||| ||||| || | |||| |||| ||| ||||| | | || |
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| T |
32167096 |
tacctcattgattccatgtttcgggcagaaatatcgactgtagaagtcaaatccggactctggaggagcgatccctgtaacaatta-tccccatcccggg |
32167194 |
T |
|
| Q |
148 |
a-atttataaattgcatcaaaatgtggttgtacttctgtcacatt |
191 |
Q |
| |
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| ||||| |||||||||||| ||||||||||||||||| ||||| |
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|
| T |
32167195 |
acatttaacaattgcatcaaattgtggttgtacttctgtgacatt |
32167239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 17842350 - 17842395
Alignment:
| Q |
263 |
aaatatatttttaatccctataaaattgagattttccaagtttagt |
308 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
17842350 |
aaatatatttttagtccctataaaattgagaccttcaaagtttagt |
17842395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 44080845 - 44080890
Alignment:
| Q |
263 |
aaatatatttttaatccctataaaattgagattttccaagtttagt |
308 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
44080845 |
aaatatgtttttaatccctataaaattgagaccttctaagtttagt |
44080890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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