View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_12 (Length: 365)
Name: NF11814_low_12
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 15210400 - 15210737
Alignment:
| Q |
18 |
gggagcaagtggaattttccttttagggaaatcagattggataattggtgcttttcttgttgcagttggtagtttttgtctttctcttttgtttattgtc |
117 |
Q |
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| T |
15210400 |
gggagcaagtggaattttccttttagggaaatcagattggataattggtgcttttcttgttgcagttggtagtttttgtctttctcttttgtttattgtc |
15210499 |
T |
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| Q |
118 |
caggtaaacaaactatgtatcaacgtgtaattatcatatcaatagggaaatatattcaannnnnnnccatctatgtatatatatacagacttggattgtc |
217 |
Q |
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| T |
15210500 |
caggtaaacaaactatgtatcaacgtgtaattatcatatcaatagggaaatatattcaatttttttccatctatgtatatatatacagacttggattgtc |
15210599 |
T |
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| Q |
218 |
agggattatccagaagagctagtgataaacaccatttgttgctgttttgtggtaatcatatctgccattgtagctctcattgcagagggaaattcaaaag |
317 |
Q |
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| T |
15210600 |
agggattatccagaagagctagtgataaacaccatttgttgctgttttgtggtaatcatatctaccattgtagctctcattgcagagggaaattcaaatg |
15210699 |
T |
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| Q |
318 |
cttggagactcagacctgataaagagttgctatctgtg |
355 |
Q |
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| T |
15210700 |
cttggagactcagacctgataaagagttgctatctgtg |
15210737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 195 - 355
Target Start/End: Original strand, 15203802 - 15203962
Alignment:
| Q |
195 |
tatatatacagacttggattgtcagggattatccagaagagctagtgataaacaccatttgttgctgttttgtggtaatcatatctgccattgtagctct |
294 |
Q |
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| T |
15203802 |
tatatatgcagacttggattgtcaaggattatccagaagagctagtgataacaaccatttgttgctgttttgtggtaatcatatctaccattgtagctct |
15203901 |
T |
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| Q |
295 |
cattgcagagggaaattcaaaagcttggagactcagacctgataaagagttgctatctgtg |
355 |
Q |
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| T |
15203902 |
cattgcagagggaaattcaaaagcttggagactcagacctgataaagagttgctatctgtg |
15203962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 15203445 - 15203559
Alignment:
| Q |
19 |
ggagcaagtggaattttccttttagggaaatcagattggataattggtgcttttcttgttgcagttggtagtttttgtctttctcttttgtttattgtcc |
118 |
Q |
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| T |
15203445 |
ggagcaagtggaatttacctattagggaaatcagattggatacttggtgcttttcttcttgcagttgcatgtttttgtctctctcttttgtttattgtcc |
15203544 |
T |
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| Q |
119 |
aggtaaacaaactat |
133 |
Q |
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| T |
15203545 |
aggtaaacaaactat |
15203559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 355
Target Start/End: Original strand, 15181896 - 15182057
Alignment:
| Q |
194 |
atatatatacagacttggattgtcagggattatccagaagagctagtgataaacaccatttgttgctgttttgtggtaatcatatctgccattgtagctc |
293 |
Q |
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| T |
15181896 |
atatatatacagacttggattataagggattatcctgaagagctagtggtaacaagcatttgttgcagcatggtggtaattctatctgcaattgtagctc |
15181995 |
T |
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| Q |
294 |
tcattgcagagggaaattcaaaagcttggagactcagacctgataaagagttgctatctgtg |
355 |
Q |
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| T |
15181996 |
tcattgcagagggaaattcaaaagtttggattctcagacctgatagggagttggtagctgtg |
15182057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 15181598 - 15181704
Alignment:
| Q |
19 |
ggagcaagtggaattttccttttagggaaatcagattggataattggtgcttttcttgttgcagttggtagtttttgtctttctcttttgtttattgtcc |
118 |
Q |
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||||||||||||||| |||| || |||||||| |||||| |||||||||||||| ||||| || ||| |||||||||||| |||||| |||||||| |
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| T |
15181598 |
ggagcaagtggaattcatctttcagttaaatcagactggatacttggtgcttttcttcttgcaactgctagcttttgtctttctgttttgtatattgtcc |
15181697 |
T |
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| Q |
119 |
aggtaaa |
125 |
Q |
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| T |
15181698 |
aggtaaa |
15181704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 15191474 - 15191537
Alignment:
| Q |
18 |
gggagcaagtggaattttccttttagggaaatcagattggataattggtgcttttcttgttgca |
81 |
Q |
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| T |
15191474 |
gggagcaactgaaatttacctattagggaaatcagactggataattggtgcttttcttcttgca |
15191537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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