View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_15 (Length: 338)
Name: NF11814_low_15
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 242478 - 242637
Alignment:
| Q |
11 |
cagagaaagagggataccaacaaagattatctattcaaacaaaccctcgctgtgagtgaaag------agaaagaaagaagatggcggtttcaatggcta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
242478 |
cagagaaagagggataccaacaaagattatctattcaaacaaaccctcgctgtgagtgaaagaaagaaagaaagaaagaagatggcggtttcaatggcta |
242577 |
T |
|
| Q |
105 |
ccggactgttattatcatcatctcctttaactcttaggactccaaggtttgcgtttcaca |
164 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
242578 |
ccggactattattatcatcatctactttaactcttaggactccaaggtttgcgtttcaca |
242637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 338
Target Start/End: Original strand, 242676 - 242829
Alignment:
| Q |
185 |
ttgcggatggctccactccgaatagttacttccgccaccgtctctcagcctccacccaccggtggcaaaattcgcggtatcatgaaacccnnnnnnntct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
242676 |
ttgcggatggctccactccgaatagttacttccgccaccgtctctcagcctccacccaccggtggcaaaattcgcggtatcatgaaacccaaaaaaatct |
242775 |
T |
|
| Q |
285 |
cccctgagatgcaagacctcgtcggccaacccgagatttcccgaacccacgccc |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
242776 |
cccctgagatgcaagacctcgtcggccaacccgagatttcccgaacccaagccc |
242829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University