View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_17 (Length: 337)
Name: NF11814_low_17
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 2747578 - 2747917
Alignment:
| Q |
1 |
actgatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaattacaaggcataatcaactacaata------gtcaaagacaatatggta |
94 |
Q |
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| T |
2747578 |
actgatccataaaattgcttgaaaaatgatttctgaaatataaatgaaaaattacaaggcataatcaactacaatattaatagtcaaagacaatatggta |
2747677 |
T |
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| Q |
95 |
aaaccagaaaagtata--------------atcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagc |
180 |
Q |
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| T |
2747678 |
aaaccagaaaagtataatcaactacatataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaaga |
2747777 |
T |
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| Q |
181 |
atgctgatgaacatgagtcaccgtatccttccattcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacagaaaatatcaagat |
280 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747778 |
atgctgatgaacatgagtcaccgtatccgtccattcgggtgctgcattagaccgg--tatggataatataaagtttaatgaagacagaaaatatcaagat |
2747875 |
T |
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| Q |
281 |
attacaccataaccgatcaaatttgtttaccatgttgtgatt |
322 |
Q |
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| T |
2747876 |
attacaccataaccgatcaaatttgtttaccatgttgtgatt |
2747917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 107 - 307
Target Start/End: Original strand, 2755748 - 2755945
Alignment:
| Q |
107 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
206 |
Q |
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| T |
2755748 |
tataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtat |
2755847 |
T |
|
| Q |
207 |
ccttccattcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacag-aaaatatcaagatattacaccataaccgatcaaatttg |
305 |
Q |
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| T |
2755848 |
ccgtccgttcgggggctgcattagaccag--tatgcatgttataaagttcaatgaaaacagaaaaatattaag--attacaccataactgatcaaatttg |
2755943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 2755630 - 2755662
Alignment:
| Q |
4 |
gatccataaaattgcttgaaaaatgatttctga |
36 |
Q |
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| T |
2755630 |
gatccataaaattgcttgaaaaatgatttctga |
2755662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 2372998 - 2373123
Alignment:
| Q |
107 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
206 |
Q |
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|||||| ||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||| |
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| T |
2372998 |
tataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtat |
2373097 |
T |
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| Q |
207 |
ccttccattcgggtgctgcattagac |
232 |
Q |
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|| ||| |||||| |||||||||||| |
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| T |
2373098 |
ccatccgttcgggggctgcattagac |
2373123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 2372896 - 2372946
Alignment:
| Q |
4 |
gatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaatta |
54 |
Q |
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|||||||||||||||||||||| | |||||||||||| | ||| ||||||| |
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| T |
2372896 |
gatccataaaattgcttgaaaatttatttctgaaataaaaatgcaaaatta |
2372946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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