View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_18 (Length: 336)
Name: NF11814_low_18
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 31821350 - 31821039
Alignment:
| Q |
10 |
catcaaaatattaaaagtcccctaatttctcctgctgctagcttgtaactttcctctactgaaattgcattttggctttcatgtgtagctcgtttcacct |
109 |
Q |
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| T |
31821350 |
catcaaaatattaaaagtcccctaatttctcctgctgctagcttgtaactttcctccactgaaattgcattttggctttcatgtgtagctcgtttcacct |
31821251 |
T |
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| Q |
110 |
gcaatattaacacagatcaatcgagttatttacatccacattgtagatgatgaaattaagatacatgtattctcacagtttaatgctgtatatatttag- |
208 |
Q |
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| T |
31821250 |
gcaatattaacacagatcaatcgagttatttacatccacattgtagatgatgaaattaagatacatgtattctcacagtttaatgctgtatatatttagt |
31821151 |
T |
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| Q |
209 |
nnnnnnnnnnnnnnnggctgaatatattgatgaaagtgttctactatactatatgctatatagtaaatatttgttgcaatggaatttgctcttatctaaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31821150 |
ttttcatttttttttggctgaatatattgatgaaagtgttctactatactatatgctatatagtaaatatttgttgcaatggaatttgctcttatctaaa |
31821051 |
T |
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| Q |
309 |
ataaaaggttgg |
320 |
Q |
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|||||||||||| |
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| T |
31821050 |
ataaaaggttgg |
31821039 |
T |
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