View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_19 (Length: 316)
Name: NF11814_low_19
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 1923638 - 1923948
Alignment:
| Q |
1 |
tcacatttgctcaagtgttgagagaaataatatcttgactaaagttactaattagtttcagagttctcgttagatttaaatttgaataaggtttcaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
1923638 |
tcacatttgctcaagtgttgagagaaataatatcttgactaaaattactaattagtttcagagttctctttagatttaaatttgaataagatttcaattg |
1923737 |
T |
|
| Q |
101 |
ttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgtt----attagagatcacgtatggctcttcatc |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1923738 |
ttaaggataagtttatcccaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattaattagagatcacgtatggctcttcatc |
1923837 |
T |
|
| Q |
197 |
agttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatgcatgtcggcaagcgtaggtggatattatgag |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1923838 |
agttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatgcatgtcggcaagcgtaggtggatattatgag |
1923937 |
T |
|
| Q |
297 |
atttttctgtg |
307 |
Q |
| |
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||||||||||| |
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| T |
1923938 |
atttttctgtg |
1923948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 17498830 - 17498947
Alignment:
| Q |
78 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
177 |
Q |
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| T |
17498830 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17498929 |
T |
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| Q |
178 |
tcacgtatggctcttcat |
195 |
Q |
| |
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|||||||||||||||||| |
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| T |
17498930 |
tcacgtatggctcttcat |
17498947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 17554384 - 17554267
Alignment:
| Q |
78 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
177 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17554384 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17554285 |
T |
|
| Q |
178 |
tcacgtatggctcttcat |
195 |
Q |
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|||||||||||||||||| |
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| T |
17554284 |
tcacgtatggctcttcat |
17554267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 17498951 - 17498998
Alignment:
| Q |
224 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
271 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
17498951 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17498998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 17554263 - 17554216
Alignment:
| Q |
224 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
271 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17554263 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17554216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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