View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_20 (Length: 315)
Name: NF11814_low_20
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 49686387 - 49686094
Alignment:
| Q |
12 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatccta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686387 |
atcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatccta |
49686288 |
T |
|
| Q |
112 |
ttctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686287 |
ttctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactaca |
49686188 |
T |
|
| Q |
212 |
caagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaactcactttttgctaaattctctg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
49686187 |
caagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctg |
49686094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 49690647 - 49690421
Alignment:
| Q |
12 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactaga |
102 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||| | |
|
|
| T |
49690647 |
atcaccactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaa |
49690548 |
T |
|
| Q |
103 |
gccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaa |
202 |
Q |
| |
|
||||| | ||| |||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
49690547 |
gccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgacttggaaa |
49690451 |
T |
|
| Q |
203 |
at---tactacacaagtcatgtgaatttgt |
229 |
Q |
| |
|
|| ||| ||||||||| ||| ||||||| |
|
|
| T |
49690450 |
atgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 49679020 - 49678948
Alignment:
| Q |
12 |
atcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaaga |
84 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
49679020 |
atcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaga |
49678948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 49690378 - 49690330
Alignment:
| Q |
259 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgct |
307 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgct |
49690330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University