View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_23 (Length: 278)
Name: NF11814_low_23
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 77 - 268
Target Start/End: Original strand, 36766611 - 36766802
Alignment:
| Q |
77 |
tttcgttaaagtagtcaaaagacttaaaatataactactgaaacttaattcaatacttttgttgaaacaaagattacctgtgcaataattgttatatcaa |
176 |
Q |
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| T |
36766611 |
tttcattaaagtagtcaaaagacttaaaatataactactgaaacttaattcaatacttttgttgaaacaaagattacctgtgcaataattgttatatcaa |
36766710 |
T |
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| Q |
177 |
gtgcacaacttccaaatgtcatgaaactgctattggtgacttttagattgagtttctcaatttcgtggattgttttttccacaactcctttg |
268 |
Q |
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| T |
36766711 |
gtgcacaacttccaaatgtcatgaaactgctattggtgacttttagattgagtttctcaattttgtggattgttttttccacaactcctttg |
36766802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 36766495 - 36766554
Alignment:
| Q |
24 |
atccatctgcaaattgcacaaatagtttccttattgatagacaattgtagtaatttcgtt |
83 |
Q |
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| T |
36766495 |
atccatctgcaaattgcacaaatagtttccttattgatagacaattgtagtaatttcgtt |
36766554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 2377841 - 2377750
Alignment:
| Q |
149 |
attacctgtgcaataattgttatatcaagtgcacaacttccaaatgtcatgaaactgctattggtgacttttagattgagtttctcaatttc |
240 |
Q |
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| T |
2377841 |
attacctgagcaatgatggttatatcaagggtgaaattcccaaaagtcaaggaactgctattgatgacttttagatgaagtttctcaatttc |
2377750 |
T |
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