View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_25 (Length: 261)
Name: NF11814_low_25
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_25 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0005 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 231630 - 231364
Alignment:
| Q |
11 |
cacagacaacaatgtttatacacgaagcaagctattatttgtccttcgattcatttttgaacnnnnnnnn----tgtttgaatcatgtattcacataatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
231630 |
cacagacaacaatgtttatatacgaagcaagctattatttgtccttcgattcatttttgaacaaaaaaaaaaaatgttcgaatcatgtattcacataatt |
231531 |
T |
|
| Q |
107 |
tcccaataaatgatcggataccataagagaaa------------cagatgcattacctcaatggttgaaatcaaatcgtcaccgaaatcctatcccgagg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
231530 |
tcccaataaatgatcggataccataagagaaaacataagagaaacagatgcattaactcaatggttgaaatcaaatcgtcaccgaaatcctatccagagg |
231431 |
T |
|
| Q |
195 |
caccaaaaaataccaagttatgaaattaactcctccgtgacttgcttctcgtgcggacaatgtcatt |
261 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
231430 |
caccaaaaaataccaagttctacaattaactcctccgtgacttgcttctcgtgcggacaatgtcatt |
231364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 14585744 - 14586010
Alignment:
| Q |
11 |
cacagacaacaatgtttatacacgaagcaagctattatttgtccttcgattcatttttgaacnnnnnnnn----tgtttgaatcatgtattcacataatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
14585744 |
cacagacaacaatgtttatatacgaagcaagctattatttgtccttcgattcatttttgaacaaaaaaaaaaaatgttcgaatcatgtattcacataatt |
14585843 |
T |
|
| Q |
107 |
tcccaataaatgatcggataccata------------agagaaacagatgcattacctcaatggttgaaatcaaatcgtcaccgaaatcctatcccgagg |
194 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14585844 |
tcccaataaatgatcggataccataagagaaaacataagagaaacagatgcattaactcaatggttgaaatcaaatcgtcaccgaaatcctatccagagg |
14585943 |
T |
|
| Q |
195 |
caccaaaaaataccaagttatgaaattaactcctccgtgacttgcttctcgtgcggacaatgtcatt |
261 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14585944 |
caccaaaaaataccaagttctacaattaactcctccgtgacttgcttctcgtgcggacaatgtcatt |
14586010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 26853954 - 26853893
Alignment:
| Q |
11 |
cacagacaacaatgtttatacacgaagcaagctattatttgtccttcgattcatttttgaac |
72 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26853954 |
cacagccagcaatgtttatacatgaagcaagctattatttgtccttcgattcatatttgaac |
26853893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45242739 - 45242800
Alignment:
| Q |
11 |
cacagacaacaatgtttatacacgaagcaagctattatttgtccttcgattcatttttgaac |
72 |
Q |
| |
|
||||| || ||||||||||| | ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
45242739 |
cacaggcagcaatgtttatatatgaagcaacctattatttgtccttcgattcagatttgaac |
45242800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 42316946 - 42316903
Alignment:
| Q |
20 |
caatgtttatacacgaagcaagctattatttgtccttcgattca |
63 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
42316946 |
caatgtttatatatgaagcaacctattatttgtccttcgattca |
42316903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 31664103 - 31664146
Alignment:
| Q |
20 |
caatgtttatacacgaagcaagctattatttgtccttcgattca |
63 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
31664103 |
caatgtttatatatgaagcaacctattatttgtccttcgattca |
31664146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University