View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_28 (Length: 249)
Name: NF11814_low_28
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 30963855 - 30963621
Alignment:
| Q |
8 |
tatatcaacttattcaacgacgaaaaggggttgagttaagattgtaactatatcaatgaacgtttattgaaatttctaggcaggcacactaatttcaatt |
107 |
Q |
| |
|
|||| |||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30963855 |
tatagcaacttgttaaacgacaaaaaggggttgagataagattgtaactatatcaatgaacgtttattgaaagttctaggcaggcacactaatttcaatt |
30963756 |
T |
|
| Q |
108 |
tcatttggtgggtcgcatttgatttacgcgtcaatttgacaaacttttattttcaatacaactccaattttatgcatcatatgcgccatgttaataaata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30963755 |
tcatttggtgggtcgcatttgatttacgcgtcaatttgacaaacttttattttcaatacaactccaattttatgcatcatatgcgccatgttaataaaca |
30963656 |
T |
|
| Q |
208 |
aaactaagatgaagtttgcgtatgccttccctttg |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30963655 |
aaactaagatgaagtttgcttatgccttccctttg |
30963621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 30963943 - 30963902
Alignment:
| Q |
17 |
ttattcaacgacgaaaaggggttgagttaagattgtaactat |
58 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
30963943 |
ttattaaacgacaaaaaagggttgagttaagattgtaactat |
30963902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University