View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_30 (Length: 246)
Name: NF11814_low_30
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 43985109 - 43985284
Alignment:
| Q |
62 |
ttagttgaattcaatgtagaagtgcttcaccactacctcttaattgagtttaatcaatctacgaatacaatctatcaacaacctgccaaccgaactctca |
161 |
Q |
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| T |
43985109 |
ttagttgaattcgatgtagaagtgtttcaccactacctcttaattgagattaatcaatctacgaatacaatctatcaacaacctgccaaccgaactctca |
43985208 |
T |
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| Q |
162 |
ttctcatcctgtgatgatataattagcaacaactaaggaatccaccttcacctcgactactcaaaaacctatccttctc |
240 |
Q |
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| T |
43985209 |
ttctca---tgtgatgatataattagcaacaactaagaaatccgccttcacctcgactactcaaagccccatccttctc |
43985284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 48458850 - 48458805
Alignment:
| Q |
17 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
62 |
Q |
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| T |
48458850 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
48458805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 42739596 - 42739552
Alignment:
| Q |
18 |
gaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
62 |
Q |
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| T |
42739596 |
gaaacgtgggtttggtgagcaaaaacgttcaaccaaacagacact |
42739552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 49503244 - 49503199
Alignment:
| Q |
17 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
62 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49503244 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
49503199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 49509309 - 49509264
Alignment:
| Q |
17 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509309 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
49509264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 49518924 - 49518879
Alignment:
| Q |
17 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49518924 |
agaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
49518879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 42945826 - 42945869
Alignment:
| Q |
18 |
gaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacac |
61 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42945826 |
gaaatgtgggtttggtgagcaaaaacgctcaaccaaacagacac |
42945869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 26552205 - 26552112
Alignment:
| Q |
112 |
taatcaatctacgaatacaatctatcaacaacctgccaaccgaactctcattctcatcctgtgatgatataattagcaacaactaaggaatccac |
206 |
Q |
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||||||||||||| |||| |||| |||| |||| ||||||| |||||||||| ||| || || | ||| ||||||||| ||||||||||||||| |
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| T |
26552205 |
taatcaatctacggatacgctctaccaacgaccttccaaccggactctcattcccattct-tgttaatacaattagcaataactaaggaatccac |
26552112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 48510101 - 48510057
Alignment:
| Q |
18 |
gaaacgtgggtttggtgagcaaaaacgctcaaccaaacagacact |
62 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
48510101 |
gaaacgtaggtttggtgagcaaaaacactcaaccaaagagacact |
48510057 |
T |
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