View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_31 (Length: 245)
Name: NF11814_low_31
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42413427 - 42413659
Alignment:
| Q |
1 |
aactgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaagggagtgaatgtcattttcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42413427 |
aactgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaagggagtgaatgtcattttcatga |
42413526 |
T |
|
| Q |
101 |
gttaatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggtgagaagaatgagaatttagtaggtgnnnnnnnagccattgtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42413527 |
gttaatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggcgagaagaatgagaatttagtaggtgtttttttagccattgtgg |
42413626 |
T |
|
| Q |
201 |
aaattggttttggttttaatttgtgagatgtcc |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
42413627 |
aaattggttttggttttaatttgtgatatgtcc |
42413659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University