View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11814_low_35 (Length: 242)
Name: NF11814_low_35
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_35 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37969462 - 37969221
Alignment:
| Q |
1 |
agcagagaagcctcagaatttacgtaaacgattcccaaccttttatttggattcttagccttcaaataaatttcataatgtggtggcctagtgacgtttt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37969462 |
agcatagaagcctcagaatttacgtaaacgattcccaaccttttatttggattcttagccttcaaataaatttcataatgtggtggcctagtaacgtttt |
37969363 |
T |
|
| Q |
101 |
ttacctcaaagcgggtaatagtaaatgtgggtccctctgggttgaaaacaaagaacaatgtggctaatgttattccaacaacggcaacgattgtaacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37969362 |
ttacctcaaagcgggtaatagtaaatgtgggtccctctgggttgaaaacaaagaacaatgtggctaatgttattccaacaacagcaacgattgtaacaag |
37969263 |
T |
|
| Q |
201 |
gattaaaacaatggtgagcaagaatcgagggcaacaacaacc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969262 |
gattaaaacaatggtgagcaagaatcgagggcaacaacaacc |
37969221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University