View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11814_low_36 (Length: 240)
Name: NF11814_low_36
Description: NF11814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11814_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 33786196 - 33786402
Alignment:
| Q |
25 |
cacatataattgattgtgatttgttgatagtataaaactttttataccgatggtttatcaaaattaaacgaactagatacataccttaggaataagtgat |
124 |
Q |
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| T |
33786196 |
cacatataattgattgtgatttgttgatagtataaaactttttataccgacggtttatcaaaattaaacgaactagatacataccttaggaataagagat |
33786295 |
T |
|
| Q |
125 |
tgtctatcaagaatttcaaaaactgatgcaactgctgttgagcttttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtattca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33786296 |
tgtctatcaagaatttcaaaaactgatgcaactgctgttgagcttttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactca |
33786395 |
T |
|
| Q |
225 |
ccaaaac |
231 |
Q |
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||||||| |
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| T |
33786396 |
ccaaaac |
33786402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 2623381 - 2623320
Alignment:
| Q |
169 |
tttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtattcaccaaaa |
230 |
Q |
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| T |
2623381 |
tttagcaagatcattcgtcatgctaccagcatcagcgataacttttccggtacttaccaaaa |
2623320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 2591837 - 2591776
Alignment:
| Q |
169 |
tttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtattcaccaaaa |
230 |
Q |
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| T |
2591837 |
tttagcaagatcattcgtcatgctaccagcatcagcaattacttttccggtagttaccaaaa |
2591776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 46937032 - 46936957
Alignment:
| Q |
18 |
aaagtcacacatataattgattgtgatttgttgatagtataaaactttttataccgatggtttatcaaaattaaac |
93 |
Q |
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|||||||||||||| ||||||||||||||||||| | ||||||||||||| ||| | || ||||||||||||| |
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| T |
46937032 |
aaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaac |
46936957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 44556778 - 44556727
Alignment:
| Q |
17 |
aaaagtcacacatataattgattgtgatttgttgatagtataaaacttttta |
68 |
Q |
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| T |
44556778 |
aaaagtcgcacatataattgattgtgattttttggcagtttaaaacttttta |
44556727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 21008179 - 21008134
Alignment:
| Q |
17 |
aaaagtcacacatataattgattgtgatttgttgatagtataaaact |
63 |
Q |
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| T |
21008179 |
aaaagtcaca-atataaatgattgtgatttgttcatagtataaaact |
21008134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 40363143 - 40363196
Alignment:
| Q |
18 |
aaagtcacacatataattgattgtgatttgttgatagtat-aaaactttttata |
70 |
Q |
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| T |
40363143 |
aaagtcacatatataattgattctaatttgttgataatataaaaactttttata |
40363196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 45128729 - 45128779
Alignment:
| Q |
18 |
aaagtcacacatataattgattgtgatttgttgatagtataaaacttttta |
68 |
Q |
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|||||||||||||| ||||||||| || ||||||||| |||||||||||| |
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| T |
45128729 |
aaagtcacacatatgattgattgtaatgcgttgatagtgtaaaacttttta |
45128779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 43244870 - 43244903
Alignment:
| Q |
18 |
aaagtcacacatataattgattgtgatttgttga |
51 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
43244870 |
aaagtcacacatattattgattgtgatttgttga |
43244903 |
T |
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